rs50966789 SNP Detail

Summary

• ID
  rs50966789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135622099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCAAGG TAGATCTAGG
  AGGATACAAG CTGGCATTCA ACTGAGCCAG CAACTGGCCC CCTCCACAGT TCTTGCTATG
  TCTTCATAGC AAATTCCTCT GTTAGAGGTA ATGCTGTGTG GAATGGTGTC TTAGCTAGGG
  TTTCGTTGCT ATGAAGAGAC ACCATGACCA AGGCAACTCT TACAGCCAAG CATATTCAAA
  Y
  CACCACAAAT AGCAAACAAG CCTAGCTTCA GGTACCTGCT TGGGTTCCTG CCTTGATGTC
  TCTCTCAATA AGAAACTGTC ACCTGCAAGC TGAAATAAAC ACACACACAC ACACACTTTT
  GATTTTCTGC TTTGTGATTT TTGAGGCAGG GTCTCTATTT GTAGCCCTGA ATGTCCTAGA
  ATTTGCTATG TAGACCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147553163	ENSMUSSNP1822380	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50966789					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135622099 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	606 bp upstream
Rr602181	regulatory region 602181	1639 bp distal
Rr602182	regulatory region 602182	1323 bp distal
Rr602183	regulatory region 602183	203 bp proximal
Rr602184	regulatory region 602184	617 bp proximal
Rr602185	regulatory region 602185	1183 bp proximal
Tssr39650	transcription start site region 39650	392 bp upstream
Tssr39651	transcription start site region 39651	596 bp upstream
Tssr39652	transcription start site region 39652	626 bp upstream