rs49994941 SNP Detail

Summary

• ID
  rs49994941
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAACAGCA ATCAAAAGAT
  GAAAACAGGG ATGGTGCAGG ATTTCCAATC TTACGTTGGA AAGGCAGCCT TACTGTATTT
  TTCTAGGGGT TCTGACATTT TTAAACTCTC AGTTGGAGGC TAATGAAAAT TAACTTGGAT
  CTTGAACTTA ATATCCATGA AAAAGAAATC CTTTAAATCG GGAGTTTGAT ATAAATACAC
  K
  CGAGGAAAGA GTACACTGGA AACACAAAGT GTGGGCATTT TAAAAATTTT GTTTAGGTTT
  GCTGCATTGT GAAATGTCTC ATCTTAAATA TAAACCATGC GATGTGTTTC TACAGTTAAT
  CAAAAGGATC AGTTTCTCTC TCTCGCCTTT GGTTAAAACA TGAGTCAGTA TGCTTAAATT
  GCAAGGGGTA CACACTTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146954218	ENSMUSSNP977731	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320397646	CHEV_2_94245492	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49994941					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810002D19Rik	RIKEN cDNA 2810002D19 gene			1372 bp upstream
Cpgi11962	CpG island 11962			679 bp proximal
Rr561373	regulatory region 561373			326 bp proximal
Rr561374	regulatory region 561374			797 bp proximal
Rr561375	regulatory region 561375			1142 bp proximal
Rr561376	regulatory region 561376			1334 bp proximal
Rr561377	regulatory region 561377			1367 bp proximal
Rr561378	regulatory region 561378			1421 bp proximal
Tssr19003	transcription start site region 19003			1384 bp upstream
Tssr19004	transcription start site region 19004			1428 bp upstream
Tssr25328	transcription start site region 25328			333 bp upstream
Tssr25329	transcription start site region 25329			1312 bp downstream
Ttc17	tetratricopeptide repeat domain 17			Intron
				mRNA-UTR