rs48607200 SNP Detail

Summary

• ID
  rs48607200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCTGGAA GGGAGGAAAC
  TGCCAGGGGA GCCACGTCTA GAAGTCAGCG CTTCCCTCCT CCTGCCAACT CCACGTTTCC
  GCCAGCAGGA GGCACCAGCG AAGCGCCAGC GCGGGGTTCG CACGGGAACC TCTACAAGGA
  CTTGTTCGTT TGCTGCAGCA AGGAAGTCAG AGAGCCCAAG CTCTGGAGCG ACAGCCCTGG
  R
  CTGCACCTCA TTCTCCGCCT CTGTCCTTTA ATGCTCGTGA GACTGGGTAG TCTGCTTGAC
  CCCTCTGAGT CTCACATTCC CCGTGTGGGA AGTGAGGCTG GCCCTGAGAG GGATATTTGC
  TCCAAATTTA GAGGTTGAGG CAGACAGTCT TCTGGCACAA GAGTCTGCTC AGTTCAGATT
  CACCACAGCC CAACAGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557377	ENSMUSSNP5737787	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48607200					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	within coordinates
Cpgi15094	CpG island 15094	1032 bp proximal
Rr367750	regulatory region 367750	1250 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	102 bp distal
Rr602259	regulatory region 602259	518 bp proximal
Rr602260	regulatory region 602260	1452 bp proximal