rs48503894 SNP Detail

Summary

• ID
  rs48503894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133482292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAACTTG TCAAAGTTTC
  AAATGTGGGT TCAGTCAGCT CTTCTCAGAT CCAGTGAATG TACTTTAAAA CGTTAGCAAG
  CAGCACTGGA CATTGCACAA CGTTTGGAGG TGAGAAGACG CTTCTTGGCA TTTTAATCTT
  AAAGTGTAAT TAGTGAAGGC TTTCTCATAT TTTGCTACCA CTATAATTTA CCTCGAGTAC
  K
  GCTAAAGACT CAAATTAGCC ATCAAGAAAG GTGTTGGATG AACAATTGTG AGGAACTGAA
  ATACAAGCTA TAGTAATTTA GGCTTCACTG TTTCATTTGG ACACACTTTA AAAAAATATT
  TGTCAGAATC AGAACTTCCT TTTGAGCTCT GTCGCTGAAA TTGCTTTAAC TCGAGAGAGA
  TTTTATGTGA TGGCTTCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61084036	NES16591986	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48503894					SNP	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084036	NES16591986	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133482292 () rs orientation: forward

Symbol	Name	Function Class
Rr585601	regulatory region 585601	271 bp distal