rs48209421 SNP Detail

Summary

• ID
  rs48209421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133481926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCAATAT TATTTTTGAG
  TGAGAATTTT GACTTTGGTG GGCTATGTCC CATCAGTTTA TTATCATACA GATTGTGCTT
  TCAGTGCAGT GCTTTCATCT TTGTTTAACC CGATCATCCA TCCCCCCCCC CCCCCCCCCC
  CCCCCCCCCC CCCCGTTGTC CTCTTTATTT TTCTTGTCAT TCCTTGGTGC CAAGAGCAGA
  R
  GTGGCAGAAC AGGTTTTCGG CCAGGGAAAG ATGTGATTTC TGTCTTCAAT GGCTCTGTGT
  GGTCTGGATA CTTGCCATTT GGAGCTAGGA AGGAACCAGA GGTTTGAAAA CTTTCTGTGA
  AACTTCATAT TCTGACTAAG AAGTGGGGAG TTACTCTTTG CTGTTAGAGA ACTTGTCAAA
  GTTTCAAATG TGGGTTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61084040	NES16591981	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48209421					SNP	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084040	NES16591981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133481926 () rs orientation: forward

Symbol	Name	Function Class
Rr585601	regulatory region 585601	within coordinates