rs47558944 SNP Detail

Summary

• ID
  rs47558944
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTTGGAA AGATGACAGC
  TAGACAACTG GTCCTGACTA CAAGCCTCTG GGCAATGCTG GAAGGGAGGA AACTGCCAGG
  GGAGCCACGT CTAGAAGTCA GCGCTTCCCT CCTCCTGCCA ACTCCACGTT TCCGCCAGCA
  GGAGGCACCA GCGAAGCGCC AGCGCGGGGT TCGCACGGGA ACCTCTACAA GGACTTGTTC
  S
  TTTGCTGCAG CAAGGAAGTC AGAGAGCCCA AGCTCTGGAG CGACAGCCCT GGACTGCACC
  TCATTCTCCG CCTCTGTCCT TTAATGCTCG TGAGACTGGG TAGTCTGCTT GACCCCTCTG
  AGTCTCACAT TCCCCGTGTG GGAAGTGAGG CTGGCCCTGA GAGGGATATT TGCTCCAAAT
  TTAGAGGTTG AGGCAGACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557357	ENSMUSSNP2312503	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47558944					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	within coordinates
Cpgi15094	CpG island 15094	1085 bp proximal
Rr367750	regulatory region 367750	1303 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	49 bp distal
Rr602259	regulatory region 602259	571 bp proximal
Rr602260	regulatory region 602260	1505 bp proximal