rs46561699 SNP Detail

Summary

• ID
  rs46561699
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133482615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAATCAG AACTTCCTTT
  TGAGCTCTGT CGCTGAAATT GCTTTAACTC GAGAGAGATT TTATGTGATG GCTTCTTAAA
  CACTAGCCTT TTAAGTCACC GAATATAGAA ACAAAATTTC CCTTTAAGCC ACTTACTCTA
  AAGAAAACTT TCCTATGAAA AGAAAATTGG TTGAAAAGTT TGTATTTAAT TCAATACAAC
  W
  TTTATAGAGC AGATAACCTA GATGTTGCTA TGTTGTTATT TATGATACTC ATATCTGTGG
  GACTCTCTTT TGTGTGCATG TATGTGTATG TACATATCTT ATTATTGCAT AGATACATAT
  GCAGGTGTGT GTGTGTGTGT GTGTGTGTGT AGGGCAAGGA TCAACTTTGG ATGTTGATCA
  TCAGGCTGTT GGATTAATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
ss61084034	NES16591988	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
rs46561699					SNP	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084034	NES16591988	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133482615 () rs orientation: forward

Symbol	Name	Function Class
Rr585601	regulatory region 585601	594 bp distal