rs37943477 SNP Detail

Summary

• ID
  rs37943477
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49797605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAATGTC TTGATTTCTC
  AGTGTCTATG AATTTTGATA GTAATACAAT CTGGCATAAA CAAGCCGTAC TGGTTGTTAT
  CCTTCCCTAG TCTCTTTGTC TTTGAAAATC ATGGTTTTTG ACATTTCCTT GATTTCTACT
  TCCTAAGTAG AGTTTGTTCT TTTACTCATG AGCCGAGTTT TTGCTCAGTG TCTGAGCAAG
  S
  CAGAAAATTG GCCTCTTTCC ATATTTACAT TCTGTAGAAT CTCCAGGGTC TTCATTTCCT
  GTTATAACAT CACACTGAGT CCCACTTTGC CTGATGTTCT GAGCATCCTG TGAGAAATCT
  ATTCAATCGG AGCTTGATCA GATATCCCAC ATATCCAGAT GACTGAATCC CATTTAACTC
  TAACTCCTAA ATGTCTTTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51521362	NES14699133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37943477					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51521362	NES14699133	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49797605 () rs orientation: forward

Symbol	Name	Function Class
Rr576114	regulatory region 576114	626 bp distal