rs32652099 SNP Detail

Summary

• ID
  rs32652099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150043773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGGGGA GAGGGGATCT
  TCCGATAACC ATTATTGCAA TGGTTTTTGT TGTTTGTTTG TTTATAAGGA TATACTTATT
  TTTATTTTAT ATCAATGAAT GTTTTGCCTA CGAGTCCACA AGCGTACTGT GTGAGTGCCT
  GGTACTGGTA GAGGCCAGAA GTTGGTGCCA GATCCCCTGG AACTGGGAGT TATGAACGGT
  Y
  GTGAGCTGTC TGTCGTGTGG GTGCTGAGAG TTGAACCCAT ATCTTCTGAG AGAGCAGCCG
  GTGCTCTTAG GCACTAAGTT TACCTCTCCA GCTCCTACTG CAATATTTTC TGATAATTCT
  TCCACGAAAA TAATAGCCAG TCGGCTGGGA TGCTGTGCCT CTGTCAGATT GTCACTAGTA
  ATGTTTGCCA GTCCTTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46709793	NES11013575	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32652099					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46709793	NES11013575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150043773 () rs orientation: forward

Symbol	Name	Function Class
Rr605123	regulatory region 605123	256 bp distal
Rr605124	regulatory region 605124	519 bp distal
Rr605125	regulatory region 605125	424 bp proximal