rs30797349 SNP Detail

Summary

• ID
  rs30797349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:9890043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGGAGCACA GAGCCCTCAA TGCAGGAACT AGAGAAAGTA CCAAAGGGAC TAAAGGGGTC
  TACAAACATA TAGGAGGAAC AACAATATGA ACTAACCAGT AACCCCCAGA GCTTGTGTCT
  CTAGTTGCAT ATGTAGCAGA AGATGGCCTC ATACCAAATT CATGACACCA CAGTTATGTT
  GGTCATGGGC TAATTAGACC TGTTACCATC GAGATGTCTT ATTTAAGGGG AACGTATGGG
  CGATAACGCA TTTGATGGCC CTGAAGTAAG AACCAGATGT CTGATAAAGT TTCAGTTTAG
  S
  TACCCCCAAG TTCAATGGGC CCGGAGCAAG AAGAGGGGCA TTGGTGGGCG GGTTGTTGGT
  TTCACGGAGG ATGGTAGATT AATAGACCAA ATGGGGAAGG GGATAGTCAT ATAGAAGAGA
  AAGATTTATG ACTGAATGGT ATATGTCTGA TAACGCAGAG TTGGCCATCA ATGGGAGGAG
  AGGCCCTTGT TCTTGTGAAG ATTATATGCC CCAGTACAGG TGAATGCCAG GGCCAGGAAG
  GAGGAATGGG TGGGTTGAGA AGCATGGTTG TGGGGAGTGT ATAGGGGACT TTTGGAGAGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45963977	mCV23992233	ABI	CRAMUS_MOUSE	f	SNP	G	G					C		G
ss47789978	NES11636983	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	C	C		C	G	C	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30797349					SNP	G	G	C	C	C	C	C	C	G	C	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47789978	NES11636983	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9890043 () rs orientation: forward

Symbol	Name	Function Class
Rr626475	regulatory region 626475	within coordinates