rs29807299 SNP Detail

Summary

• ID
  rs29807299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30087094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACCACA GAATCCAAAA
  GGCCCTTGCC ACAGTTATAA GCCTCATGGT GCGCTAGGTG AGGAGCGTGT GTAAAAAGGC
  ATCCTGTTGG CTTTGTTGGT TTCTTCCTCT GTAAAATGAA GATAAATTAG CATAAGAGCC
  AGTGTGTGAT ATACTGCTAT TGAGAGGATT AGAGAAGACG ATCTATACAC AGGCCTCCCT
  Y
  ACTTCAGCGG CTAGCAGGTG GAGACCTCCT GCACGTCCAT TATAATAGGA TGCTACCTTG
  AGAACAGAAT AACTATCTTC ACAAATACCC TCTGTGTTCT GTTCATTATT TTATGTGTGA
  ATCCTTTTAC CAGGAGAGAG AGGCTGTTTT TCTTCCTAAT TTATTTGCTG CTCACCAAAG
  CAGTAGTTTT TTTGTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49571515	NES12883111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29807299					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571515	NES12883111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30087094 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574713	regulatory region 574713			1825 bp distal
Rr574714	regulatory region 574714			1620 bp distal