rs29807295 SNP Detail

Summary

• ID
  rs29807295
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30087241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATACTGC TATTGAGAGG
  ATTAGAGAAG ACGATCTATA CACAGGCCTC CCTCACTTCA GCGGCTAGCA GGTGGAGACC
  TCCTGCACGT CCATTATAAT AGGATGCTAC CTTGAGAACA GAATAACTAT CTTCACAAAT
  ACCCTCTGTG TTCTGTTCAT TATTTTATGT GTGAATCCTT TTACCAGGAG AGAGAGGCTG
  K
  TTTTCTTCCT AATTTATTTG CTGCTCACCA AAGCAGTAGT TTTTTTGTTT TTGTTTTTGT
  TTTTCTAATT TTGGCTTTTT AAAAAAGATT TATTTAATAT ATGTGAGGAT GCTGTCGCTC
  TTATCAGACA CACCAGAAGA GGGCATCAGA TCCCATTACA GATGGTTGTG AGCCACTATG
  TGGTTGCTGG GAATTGAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49571511	NES12883115	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29807295					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571511	NES12883115	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30087241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574713	regulatory region 574713			1972 bp distal
Rr574714	regulatory region 574714			1767 bp distal