rs29701773 SNP Detail

Summary

• ID
  rs29701773
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9626495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCTACC TTTGCACAAG
  GAATTTCCCC AATAAATTGC TTGTATGCTT AATTCTGTCT TGGCTCTTGC TTCTGAGATG
  GTCAAGCTTA GCACATCTTG GGTAATACAA TGACCCTTCC TGAAACCAGC AACTTTCAAA
  CAGGCCCCAG AAAACTGGCA TTTTGTAAAA GTTTTTAAAA TAGACCCTCA GGTTTGAAAA
  W
  TTTCCTTCCC TATTCCATGC TTCTGTACCT TCAATGCGAC ACTAATAACA GGAAAGCAGG
  CCTTTAAGTA GGTGCATCAA ACTGACCACT CTCCTAATAT TTAAGCCTTT CCTTTAGTTA
  CAGACTCACC GAGCCCTGAT GAGAAGGCGA GCAATACTAA GTAGTTTCTT GGACTTAGCC
  ACTTACGCAT CCATCTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49557619	NES12888495	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29701773					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557619	NES12888495	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9626495 () rs orientation: forward

Symbol	Name	Function Class
Rr573446	regulatory region 573446	1537 bp proximal
Zfp704	zinc finger protein 704	Intron