rs27922238 SNP Detail

Summary

• ID
  rs27922238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64449130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAAGTT TTCATTTTGA
  GAGTTGAAAT CTCAAGTGTT TTCCTGCTCA AAGGGAAAAT GCCCAGTAGA GGGAGCCAAC
  CACCATTAAG AGCATCTTCC TTACATTGGA GAATTAAGTC TCCATGGTCT ATACCCAAAA
  CACTGGAGCA GAGTAGATAG CTTCATTGGT GGTTTGGGAG CTGGGGAAGT TGGCGATTGT
  Y
  GTGTTCCTAA CCTGAGCAAA CAATCATGAT TGGGCACTGT GTCCTTTCGT CTTTAGAACG
  GAGATAACCT TTAACTTTCT TTCTCTATCG TTGTCTAGTG GTTTCCCATT TTTAAATCTA
  ATAGTAAAGT AGCCGACCCT CATGAAAAAG GACTCTCTTA GGATTCAACC ACTGTTTCCT
  TCAGCTCTAA GGAGACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38049168	NES09398099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27922238					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38049168	NES09398099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64449130 () rs orientation: forward

Symbol	Name	Function Class
Rr593663	regulatory region 593663	within coordinates
Rr593664	regulatory region 593664	121 bp distal