rs27863446 SNP Detail

Summary

• ID
  rs27863446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58663090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATACAAG CAAAACTGAA
  CGAGAAAGGA CAGCTCCCAA CGAATGCATA CAGCTTTCAT GTCACTAAAA TTAAATTGAA
  AACCCCTAAG TCAAAGCATT ATAGATCAGG ATCCAGCTCT GTGTGTGCAA AGCTGCCCAT
  AACTTTATTT CAGCTATAGA AATGAAAAAC AGGCAAGAAA TACAACATGG TTAAACAGCC
  R
  TTAATGGTGA CTGCAAAAGT ATCTATGCAT GAGAACACTT CTCCAAAAGT TTTATTTAGG
  GAGGATCAGA ACTTCAAGGC CAACTTGGAC TACACAGCAA GATCAACGCC AGCCTGAGCT
  GCACATAGTG ATATTTCTCT TAGAGAAAAT CATTTGATGC AAAAGCTTAG CTTAAAATGA
  GTTTTGCGTG GAGCTGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38013169	NES09393946	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G		A	A		G
ss321138688	CHEV_4_58675962	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27863446					SNP	A	A	A	A	A	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013169	NES09393946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58663090 () rs orientation: forward

Symbol	Name	Function Class
Rr592922	regulatory region 592922	805 bp distal
Rr592923	regulatory region 592923	579 bp proximal