rs27615988 SNP Detail

Summary

• ID
  rs27615988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148333506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTGTA TACGTATGTA
  CATGTTTGTG TACACATGTT CCTGTACCTT CTTTGGCAGA GCCACAGAAG ATGAAGATGA
  CCGTGGAGAG TCTCTTGGCC TTCCTTTATC CCTACAGTTG TTAGAAAGCA TGAAGATGTG
  CAGTTGGATT GGGTGGTGCC TGACACTGTC AACTGCTAAC TATGACCTCG GGCCAAAGCC
  W
  GGATATCTTT CTCTGGTCTG GGCTGAGGGA CAGGAGTGGA TGGGGACATG TCTTCAAGAT
  AAGCACACTA CATGAGGCTC CCAGGCTCAC CGACTCAAAG GCCATGGAGA TCCACTGCAC
  ACGGCCCTCT TTGACACCCA CTGCCCCGTG GGATAGCTGC CCTGGCAGCA GGTTGGGCTC
  AGGCAGCTCC TTGCACTCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804922	NES09105410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615988					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804922	NES09105410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148333506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Disp3	dispatched RND transporter family member 3			Intron
				Noncoding-Transcript-Variant
Rr604634	regulatory region 604634			405 bp proximal
Rr604635	regulatory region 604635			470 bp proximal