rs27596049 SNP Detail

Summary

• ID
  rs27596049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137858432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATACTCT GTAATAGACA
  TTAACCCCTG GGGGGAGGGA AGAGGGTGGG ATGTGATGGA AATACCCTAT AATAGACATT
  AACCCCTGGG GGGAGGGGAG AGGGTGGGAT GTGATGGAAA TACTCTATAA TAGACATTAA
  CCCCTGGGGG GAGGGGAGAG GGTGGGATGT GATGGAAATA CCCTATAATA GACGTTAACC
  Y
  CTAGCTTGTG CCAATAAAAC ATGTCAGCCT TGGTTATTTT GAATTCTTTC AGAGGCTCAG
  GCAGTTCAAG GCCTACATAG TGGGTTCCAG GACAACCAGA GCTGCACAGT GACACCCTGT
  CTCAAAATGA CCCTCCCATC CCCCCCAAAA AAACAGTTTA CAAAAACAGA TATTAGGAGT
  TAAGTCAGAT GGGATTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769386	NES09140349	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27596049					SNP	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769386	NES09140349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137858432 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602841	regulatory region 602841	1034 bp distal
Rr602842	regulatory region 602842	847 bp distal
Rr602843	regulatory region 602843	133 bp proximal