rs27329725 SNP Detail

Summary

• ID
  rs27329725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166027268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACTAGG CTGCAGGGAA
  GAGCAGAGAG GAGATAGGGT TGAAGGGAGG ACTCGTTGGA CACTGTGAGG CTCGGGCTTT
  TCCAAGAGGT TGGAGAACAG AGGTGAAGGG ATCCTAGCAA GATAGCTATC CCTGGGTTGG
  AGAACTGGTC CTGTCTGGGT GTGCTCCAGG CTGAAGTGCT TACCTTGTTC TGCCTTTGAA
  S
  GTGCTCAAGG CTTGGAGCAC AGGTGGGTGG GAGGATGGGT AGGTGGGGCC TGCCAGCTGG
  AGGGTGGGCA GAAATCTTGA TAAAGAAGTG GGAGTCAGAA GAAGGGATAT CCCTGAAGTC
  TGCCCGCCAC GTAGGATAAT CACACAGAGG CCCAGACAGA CGCATTAAAT ACCTCTCCCA
  GGCATGCGCA GAGTTCTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512147	NES08851933	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329725					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512147	NES08851933	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166027268 () rs orientation: forward

Symbol	Name	Function Class
Gm11466	predicted gene 11466	within coordinates
Rr367371	regulatory region 367371	615 bp downstream
Rr570164	regulatory region 570164	646 bp distal
Rr570165	regulatory region 570165	726 bp distal
Rr570166	regulatory region 570166	535 bp proximal
Rr570167	regulatory region 570167	1705 bp proximal