rs27299456 SNP Detail

Summary

• ID
  rs27299456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164494655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTTGAG CTCCTGTCCT
  CACCATTGGA CAGAAACAGT GATCTATTAT CACCCATCTC AGAGTGTTCG TCAGACACAC
  AAGACTGTTT GAATTAATTG GATCAAAGGC AAGTGTCAGA TTTCAGTGAT TTCAGAATTC
  AGTAGCCATG TGTAAGTTAG AGCCACTTCA CAGACAGCTC ACAGGACACG TCCATAGTTA
  Y
  AAAAAACTTT TACTGACCAA TGCTTATCGA CCTGCGTCTA CCAAAAGGTC TCTTCAGGAA
  AGCAAGTGTA ATGCCAGAGA TCGTTAAAGG TGAAGTCTCA GGGCTGAAGA TGAAGGATGA
  CCAGGGGTTA AGGGCACACA TTTCTCTTTC AGAAGACCTT AGTTCAATTC CCAGCATCCA
  TGGGAAGTGG TTCACAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516575	NES08881700	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27299456					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516575	NES08881700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164494655 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	225 bp proximal
Tssr21622	transcription start site region 21622	1091 bp upstream
Tssr21623	transcription start site region 21623	1105 bp upstream
Tssr21624	transcription start site region 21624	1160 bp upstream
Tssr21625	transcription start site region 21625	1242 bp upstream
Wfdc9	WAP four-disulfide core domain 9	Intron