rs27299454 SNP Detail

Summary

• ID
  rs27299454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164495321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACTCAT GCACACACAT
  ACACAGAAGT TATAAACAAT CATGTTTGTC AGCTTCTACT CTTTGCCAGC TTATGTGTGG
  GCGTTTTACC TGCCTATATG TCTGATACTT GCAGAAGCCG AAAGACAGTG ATCTTACTTT
  AACACCTTAG CCAGCCCCCT GAAAGGTTCT CTGGATCCTG GTGATGCCCA ATGCCCTTCC
  R
  TTGCACACTG CTGGTATTCT TAACCATCCC AGAGAAGGGG AGCAAGGACA CCCCCAACCC
  ATATCACAAG GATGATGCTG ACACAACTCC AGGCACAAAT TACCTAAGCC AGCCGTAAAA
  CTCATGCTTT ACACTCCCTT GTCTACAGGT GACAGCAGAC TGACAGCTCT TTTGTCCAAA
  TTTGGAACGG AGCACAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516573	NES08881659	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27299454					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516573	NES08881659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164495321 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	420 bp distal
Tssr21622	transcription start site region 21622	425 bp upstream
Tssr21623	transcription start site region 21623	439 bp upstream
Tssr21624	transcription start site region 21624	494 bp upstream
Tssr21625	transcription start site region 21625	576 bp upstream
Tssr27516	transcription start site region 27516	1526 bp downstream
Tssr27517	transcription start site region 27517	1564 bp downstream
Wfdc9	WAP four-disulfide core domain 9	Intron