rs225246950 SNP Detail

Summary

• ID
  rs225246950
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:112384699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTAAA TGTTAAGCCT
  CTTCTGGACA GTGTTTCAAA TAATGAGTCT TTCCAGGTTC AACTGAAAGA TGCCCTGAGA
  TGGATTTCAG ATGAAATAGC CTTTCGCTAA TGGCACCGGG GAAAGCTGGA ATAGATCCAC
  AGCAGAGTAA TAAACAAGTT CCTTATCTTT ATATTTAAAG AGGAGGGGTC CTCAGAATTT
  W
  GATGAGGGCC CATCTTTGAG CTAAGAGATA AAGGGAGTGT CTCGGAATTT AGCAGGCAGG
  AAGCCCTAAT TTAGGAAGCT AATCTTGTTT AAGGGCACTG ACTGCTCTTC CAAAGGTCCT
  GAGCTCAATT CCCAGCATCC ACATGGTGGC TCACAACCAT CTATAATGCG ATTTGGCGTC
  TTCTTCTGGT GTGTTTGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320459571	CHEV_2_112394511	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225246950					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:112384699 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aven	apoptosis, caspase activation inhibitor			Intron
				Noncoding-Transcript-Variant
Rr562687	regulatory region 562687			311 bp proximal