rs225158523 SNP Detail

Summary

• ID
  rs225158523
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGATGGA ACGCAGCTAG
  CAGTTTAAGT GAAGTAATTC GTGCATTTAA GCATTTATTT ATGTTTTGAG CCTTATTTTG
  ATTTGAAAAG AATTTAGGGT GGTTTGGAGA ATTTAAGTGT TCCAGGAAAG GCGGCGAGTG
  ATGCAACTTT CAAGCTTCAT ACAGTTTAGA AAAAAACAAA AAAACAAAAA AACAAAAAAA
  M
  AAAAAAAACA AAAGGATCCT TTCCTGAGTC CTGATGTTTG TGCTGCACTA AGGACAAGAC
  CCCCGAGTGG CTGAGGGGAA GAAAACACTG CAAACTGATT TTCAAGCACG ATCTTGTCTT
  CATACCCCTA TCCCAATCCC CCAGGGACTG GGCCTATCTT TCTTTCCCAG GAGGAAACCA
  GGCCCAGGCC AGGGTCAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320125812	CHEV_1_174444970	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225158523					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342406 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	825 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1602 bp downstream
Rr396591	regulatory region 396591	505 bp downstream
Rr423601	regulatory region 423601	1637 bp distal
Rr423602	regulatory region 423602	1804 bp distal
Rr423603	regulatory region 423603	836 bp distal
Rr423604	regulatory region 423604	701 bp distal
Rr423605	regulatory region 423605	165 bp distal
Rr423606	regulatory region 423606	69 bp proximal
Tssr302	transcription start site region 302	827 bp upstream
Tssr10235	transcription start site region 10235	1582 bp downstream
Tssr10236	transcription start site region 10236	692 bp downstream
Tssr15228	transcription start site region 15228	859 bp upstream