rs220165864 SNP Detail

Summary

• ID
  rs220165864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107601125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGCCTT CTGGGGGTGC
  GGGGAACAGG GAAGATCAGA CACAGGATAT TGCAGTCTTA ATCCACAGCA GCCTTACCAC
  ACAGCTCAAT TCTAAAGCTT CCTGTAAGCC ATTCTGGGGA TTAAGTCCAG CTTGTATGGG
  TCAGGGCCCT GATGAACAGC AACAAAAACA GACTTAATGA ACTGAAGCAG AAGAGGGACT
  Y
  GTTGAAAGGA AAGGAGTTTG AGCCAAGGCT TGCCAGACCA GTGAGGGTCC GCCACACTGT
  ACCTTAGTCT GCATATGATT TCCTTGCCTG GCACTTGGTA TCCCAGCCAC CAGTGCTACC
  TCCATGCTCC TCCATCTGCG GGACATGGAA GTCATCACCG TTGGAAATAT TAATGGTTAA
  GCCTCATTGA GCCTCACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250721	CHEV_4_107416533	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220165864					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107601125 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Rr597058	regulatory region 597058	1180 bp proximal