rs217516761 SNP Detail

Summary

• ID
  rs217516761
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGTTTTG CTTACATAGA
  TACTTAAAGA AAGAAAAAAA TTTTAAATGT CTACAAAGTA TCAACTCTGA TTTAAACTAT
  CTTATAGGAA AACTAGAACA ACTGCCATAC AGTATCTAAT GGCATACACA TGTATCAAAC
  AACTGCTTGC AAAACTAATC CCGTGGGTGG GCACACATAT GTCATCCCAG TTACCCAAAG
  R
  CTGGCATTGG AGAGTCTCAA ATTCAAGGTC AGCCTGTGAA AATAGTGAGA CCTTAGCTCA
  AAAACTACTT AAAGGAAGCT TGGAATATTC CTCAGAGGTA TACACTTGCC TAGCATGTGC
  AAGACCCTGG CTTAGTCCTC CAATCCTGCC TCCTAACTGT GTAGAATTTG AAATCTGTGT
  GAAATCATAT GAAACCCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320429658	CHEV_2_101478929	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217516761					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469117 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	839 bp proximal
Tssr25364	transcription start site region 25364	1330 bp downstream
Tssr25365	transcription start site region 25365	1454 bp downstream