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rs215000304 SNP Detail
Summary
  • ID
    rs215000304
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr4:155872609 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGCCAGAT CCCTTGGGAC
    TGAAGTTACA CGTGGCTCTG AGATGCCCAG TGTGGGCGCT GGGAATTGAA CTTAGATCCA
    CTGTAAGAGC AGTACATACT TGGTTTGATT TTTAGTACTC GTGATAGGTG GCTCCAGCTC
    CAGGGGATCT GATATATACT TTTGGCTCTG AGGGTACTCA CATTGAAGTG CACACTCGGA
    M
    ACACACACAC ACACAATTTA TTTATGTGCA TCTGTGTGAA TGTGTAAGTC ATAAATGCTA
    GGCCCCACTT TTATGGCCTG AATTAACCTT AGTTATCAAA GTCCCCACCT GCCAATATCA
    GCAACAAATA TTTTTAGAAA GTATGTTTTT CAGGATAAAA GTGAATTAAA AATAATTCAT
    TCATTTAAAA AAATGAAAGG                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
FVB/NJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
ss363803152 MGP_WTSI_4_155162261 EVA_MGPV3 EVA_MGPV3 f SNP A C A A A A A A A A C A C A A A C A A C A A A C A C C C A C C C
SNP Consensus Information
SNP Consensus Type
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
FVB/NJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
rs215000304 SNP A C A A A A A A A A C A C A A A C A A C A A A C A C C C A C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363803152 MGP_WTSI_4_155162261 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:155872609 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm55808 predicted gene, 55808 1429 bp upstream
Rr377468 regulatory region 377468 1891 bp upstream
Rr606571 regulatory region 606571 1974 bp distal
Rr606572 regulatory region 606572 269 bp proximal
Rr606573 regulatory region 606573 762 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory