Querying by Accession ID - Results and Examples


This help document provides examples of accession IDs that may result from using MGI tools (Batch Query, Quick Search) or MGI query forms as well as samples of accession IDs to use for those queries.

Examples of accession ID results using the Quick Search

Markers
MGI:96677 : MGI ID
16590 : EntrezGene
247073 : UniGene
4394 : Homologene
MI0000248 : miRBASE
10094A-C10 : old name (for Vmn1r37)

Alleles
Apoetm1Bres : Allele symbol
Pax3tm1Buck : Allele synonym
MGI:1856798 : Allele ID
OST170322 : Cell line ID (Lexicon Genetics)
10094A-C10 : Cell line ID (Regeneron-KOMP)
EUCE0060g02.q1k5SPK : DNA Sequence for a gene-trapped allele

Vocabulary
GO:0004713 : Gene Ontology (GO Browser)
172800 : OMIM
IPR003599 : Interpro
PIRSF015599 : Protein Information Resource SuperFamily
MP:0005392 : Mammalian Phenotype (MP Browser)
EMAPA:17337 : Mouse Developmental Anatomy

Sequences
OTTMUSG00000015949 : VEGA Gene Model
ENSMUSG00000005672 : Ensembl Gene Model
14894 : NCBI Gene Model
NM_001122899 : RefSeq
P05532   or  A2AKJ2 : UniProt, EBI
U42467   or  AA212080 : GenBank, EMBL, DDBJ
TC1572427 : DFCI
DT.529646 : DoTS
U041021 : NIA

Gene Traps
LST083 : BayGenomics
FHCRC-GT-S5-7F1 : FHCRC
G017D05 : GGTC
OST284713 : Lexicon
CH0515 : SIGTR
IST10185G1BBF1 : TIGM
CMHD-GT_420F3-3 : CMHD
PST173-1 : ESDB
Ayu21-T291 : EGTC
GC0196 : TIGEM

Non-mouse IDs
HGNC:6342 or HGNC:2394 : HGNC - Human
123610 : OMIM - Human
1411 : Entrez Gene - Human
P05813 : UniProt, EBI - Human
NM_005208 : RefSeq - Human


Miscellaneous
2.7.10.1 : EC
1FRB : PDB

Types of IDs that may appear under Vocabulary Terms

MP:0005392 : Mammalian Phenotype Vocabulary (MP Browser)
GO:00047131 : Gene Ontology (GO Browser)
172800 : OMIM (Human Disease Browser)
IPR003599 : InterPro Protein Database
PIRSF015599 : Protein Information Resource SuperFamily
EMAPA:17337 : Mouse Developmental Anatomy Ontology

Types of IDs that may appear under Other Results by ID

References
J:62345 : MGI
8825637 : PubMed
MGI:1858784 : MGI
10.1006/bbrc.1999.1563 : DOI

Probes
MGI:200469 : MGI
14049 : MGC
303709   or  30026443 : IMAGE
ma05h07.r1 : WashU
560822 : ATCC
RP23-100A23 : RPCI-23
125993 : UniSTS
K0419D07 : NIA
H3075B07 : NIA 15K
H4019E10 : NIA 7.4K
M5C1016J08 : RIKEN or RIKEN FANTOM
RP24-107E24 : RPCI-24
D11Mit10 : BROAD

Expression
MA:0002769 : Adult Mouse Anatomy
MGI:1339360 : Antibody
MGI:1339359 : Antigen
MGI:1934267 : Expression Assay
MGI:3501363 : Expression Image

Mapping
MGD-CREX-2231 : MGI

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Examples of accession IDs to use in MGI queries

Note: Using the listed ID may not yield a result on any given day because of data curation and load timing.

<tr>
If you query by...The result is...For example...The format is...
Allele
Allele symbolAlleles, SequencesApoe<tm1Bres>Alphanumeric; some with brackets, some with decimals
Allele synonym Pax3<tm1Buck>
MGI Allele IDMGI:1856798
Cell line IDOST170322
DNA Sequence for gene-trapped alleleEUCE0060g02.q1k5SPK
Expression
MGI assay IDExpressionMGI:1339505Alphanumeric with colon
Genes & Markers
MGI Marker IDGenes, Sequences MGI:87895, MGD-MRK-1672Alphanumeric with colon
BROADD1184Alphanumeric
dbGSS mutant cell line IDFHCRC-GT-S15-11C1Alphanumeric
DFCI Mouse Gene Index IDTC1572427Alphanumeric
DoTS IDDT.529646Alphanumeric with decimal
E.C. number2.7.1.112Numeric with decimals
Ensembl IDENSMUSG00000005672Alphanumeric
Entrez ID16590Numeric
NIA Mouse Gene Index IDU041021Alphanumeric
UniGene ID4394Numeric
UniProtP6281Alphanumeric
UniSTS125993Numeric
VEGA IDOTTMUSG00000010935Alphanumeric
Gene Classifications
Gene Ontology (GO) ID Markers & vocabulary termsGO:00302641Alphanumeric with colon
Human Diseases
OMIMAlleles & disease terms168600Numeric
Orthology Relationships
E.C. Number Orthology 2.7.1.112 Numeric with decimals
Ensembl ID ENSMUSG00000005672 Alphanumeric
Entrez Gene ID 56063 Numeric
Homologene 20151 Numeric
HGNC ID HGNC:28837 Alphanumeric with colon
VEGA ID OTTMUSG00000010935 Alphanumeric
Probes/Clones
Affymetrix tissue/probe ID Probes/Clones & Sequences10379153
1424714_at
1451461_a_at
Numeric or alphanumeric with underscore(s)
ATCC clone ID 719230Numeric
BROADD1184Alphanumeric
GenBank/EMBL/DDBJ ID AA212080 Alphanumeric
IMAGE clone IDMGI:200469Alphanumeric with colon
MGC14049Numeric
RIKEN clone IDMGI:2420147 Alphanumeric with colon
RPCI RP23-100A23 Alphanumeric
Protein Domains
InterPro IDMarkersIPR003599 Alphanumeric
Protein Structures
PDB IDMarkers1FRBAlphanumeric
Protein Superfamilies
PIRSF IDProtein family termPIRSF016527Alphanumeric
Protein Ontology
Pro IDMarkers & SequencesPR:000003753Alphanumeric
References
PubMed IDReferencesM14791, 8825637Alphanumeric or numeric
PubMed ID99236653Numeric
DOI ID10.1006/bbrc.1999.1563Alphanumeric or numeric
MGI reference IDMGI:15219Alphanumeric with colon
J number
(Every MGI stored reference has a number of the form J:nnnnn..).
J:14135 Alphanumeric with colon
Sequences
GenBank/EMBL/DDBJ ID Markers, Probes/Clones, Sequences S40294Alphanumeric
Ensembl ID ENSMUSG00000005672
ENSMUSP00000080991
Alphanumeric
SWISS-PROT ID P05532 Alphanumeric
TrEMBL IDAAA37420Alphanumeric
DFCI Mouse Gene Index IDTC1572427Alphanumeric
DoTS IDDT.529646Alphanumeric with decimal
NIA Mouse Gene Index ID U041021 Alphanumeric with dash
UniGene ID 4394 Numeric
UniSTS 125993 Numeric
VEGA ID OTTMUSG00000015949
OTTMUST00000084765
Alphanumeric
Gene trap IDsAlleles & SequencesSee Cell Line Creators and Accession IDs for specific examples. Alphanumeric, some with special characters (e.g., dash or underscore)

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