MGI 6.23 Querying by Accession ID - Results and Examples

Querying by Accession ID - Results and Examples

This help document provides examples of accession IDs that may result from using MGI tools (Batch Query, Quick Search) or MGI query forms as well as samples of accession IDs to use for those queries.

Examples of accession ID results using the Quick Search

Types of IDs that may appear under Genome Features
- Markers
- Alleles
- Strains
- Vocabulary
- Sequences
- Gene Traps
- Non-mouse
Types of IDs that may appear under Vocabulary Terms
Types of IDs that may appear under Other Results by ID

Markers: MGI:96677 : MGI ID; 16590 : EntrezGene; 247073 : UniGene; 4394 : Homologene; MI0000248 : miRBASE; 10094A-C10 : old name (for Vmn1r37)
Alleles: MGI:1856798 : Allele ID; OST170322 : Cell line ID (Lexicon Genetics); 10094A-C10 : Cell line ID (Regeneron-KOMP); EUCE0060g02.q1k5SPK : DNA Sequence for a gene-trapped allele
Strains: MGI:3028467 : C57BL/6J
Vocabulary: GO:0004713 : Gene Ontology (GO Browser); IPR003599 : Interpro; PIRSF015599 : Protein Information Resource SuperFamily; MP:0005392 : Mammalian Phenotype (MP Browser); HP:0000526 : Human Phenotype Ontology; DOID:10652 : Disease Ontology (DO Browser); EMAPA:17337 : Mouse Developmental Anatomy; 172800 : OMIM
Sequences: ENSMUSG00000005672 : Ensembl Gene Model; 14894 : NCBI Gene Model; NM_001122899 : RefSeq; P05532 or A2AKJ2 : UniProt, EBI; U42467 or AA212080 : GenBank, EMBL, DDBJ
Gene Traps: LST083 : BayGenomics; FHCRC-GT-S5-7F1 : FHCRC; G017D05 : GGTC; OST284713 : Lexicon; CH0515 : SIGTR; IST10185G1BBF1 : TIGM; CMHD-GT_420F3-3 : CMHD; PST173-1 : ESDB; Ayu21-T291 : EGTC; GC0196 : TIGEM
Non-mouse IDs: HGNC:6342 or HGNC:2394 : HGNC - Human; 123610 : OMIM - Human; 1411 : Entrez Gene - Human; P05813 : UniProt, EBI - Human; NM_005208 : RefSeq - Human
Miscellaneous: 2.7.10.1 : EC; 1FRB : PDB

Types of IDs that may appear under Vocabulary Terms

MP:0005392 : Mammalian Phenotype Vocabulary (MP Browser)

GO:00047131 : Gene Ontology (GO Browser)

DOID:3347 : Disease Ontology (DO Browser)

IPR003599 : InterPro Protein Database

PIRSF015599 : Protein Information Resource SuperFamily

EMAPA:17337 : Mouse Developmental Anatomy Ontology

Types of IDs that may appear under Other Results by ID

References

J:62345 : MGI

8825637 : PubMed

MGI:1858784 : MGI

10.1006/bbrc.1999.1563 : DOI

Probes

MGI:200469 : MGI

14049 : MGC

303709 or 30026443 : IMAGE

ma05h07.r1 : WashU

560822 : ATCC

RP23-100A23 : RPCI-23

125993 : UniSTS

K0419D07 : NIA

H3075B07 : NIA 15K

H4019E10 : NIA 7.4K

M5C1016J08 : RIKEN or RIKEN FANTOM

RP24-107E24 : RPCI-24

D11Mit10 : BROAD

Expression

MA:0002769 : Adult Mouse Anatomy

MGI:1339360 : Antibody

MGI:1339359 : Antigen

MGI:1934267 : Expression Assay

MGI:3501363 : Expression Image

Mapping

MGD-CREX-2231 : MGI

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Examples of accession IDs to use in MGI queries

Note: Using the listed ID may not yield a result on any given day because of data curation and load timing.

If you query by...	The result is...	For example...	The format is...
Allele
Allele symbol	Alleles, Sequences	Apoe<tm1Bres>	Alphanumeric; some with brackets, some with decimals
Allele synonym		Pax3<tm1Buck>
MGI Allele ID		MGI:1856798
Cell line ID		OST170322
DNA Sequence for gene-trapped allele		EUCE0060g02.q1k5SPK
Expression
MGI assay ID	Expression	MGI:1339505	Alphanumeric with colon
Genes & Markers
MGI Marker ID	Genes, Sequences	MGI:87895, MGD-MRK-1672	Alphanumeric with colon
BROAD		D1184	Alphanumeric
dbGSS mutant cell line ID		FHCRC-GT-S15-11C1	Alphanumeric
DFCI Mouse Gene Index ID		TC1572427	Alphanumeric
DoTS ID		DT.529646	Alphanumeric with decimal
E.C. number		2.7.1.112	Numeric with decimals
Ensembl ID		ENSMUSG00000005672	Alphanumeric
Entrez ID		16590	Numeric
NIA Mouse Gene Index ID		U041021	Alphanumeric
UniGene ID		4394	Numeric
UniProt		P6281	Alphanumeric
UniSTS		125993	Numeric
Gene Classifications
Gene Ontology (GO) ID		Markers & vocabulary terms	GO:00302641	Alphanumeric with colon
Human Diseases
OMIM	Alleles & disease terms	168600	Numeric
Disease Ontology (DO)	Alleles & disease terms	DOID:8398	Numeric
Orthology Relationships
E.C. Number	Orthology	2.7.1.112	Numeric with decimals
Ensembl ID		ENSMUSG00000005672	Alphanumeric
Entrez Gene ID		56063	Numeric
Homologene		20151	Numeric
HGNC ID		HGNC:28837	Alphanumeric with colon
RefSeq ID		NM_09118	Alphanumeric with underscore
Probes/Clones
Affymetrix tissue/probe ID		Probes/Clones & Sequences	10379153 1424714_at 1451461_a_at	Numeric or alphanumeric with underscore(s)
ATCC clone ID	719230		Numeric
BROAD	D1184		Alphanumeric
GenBank/EMBL/DDBJ ID	AA212080		Alphanumeric
IMAGE clone ID	MGI:200469		Alphanumeric with colon
MGC	14049		Numeric
RIKEN clone ID	MGI:2420147		Alphanumeric with colon
RPCI	RP23-100A23		Alphanumeric
Protein Domains
InterPro ID	Markers	IPR003599	Alphanumeric
Protein Structures
PDB ID	Markers	1FRB	Alphanumeric
Protein Superfamilies
PIRSF ID	Protein family term	PIRSF016527	Alphanumeric
Protein Ontology
Pro ID	Markers & Sequences	PR:000003753	Alphanumeric
References
PubMed ID	References	M14791, 8825637	Alphanumeric or numeric
PubMed ID		99236653	Numeric
DOI ID		10.1006/bbrc.1999.1563	Alphanumeric or numeric
MGI reference ID		MGI:15219	Alphanumeric with colon
J number (Every MGI stored reference has a number of the form J:nnnnn..).		J:14135	Alphanumeric with colon
Sequences
GenBank/EMBL/DDBJ ID	Markers, Probes/Clones, Sequences	S40294	Alphanumeric
Ensembl ID	ENSMUSG00000005672 ENSMUSP00000080991	Alphanumeric
SWISS-PROT ID	P05532	Alphanumeric
TrEMBL ID	AAA37420	Alphanumeric
DFCI Mouse Gene Index ID	TC1572427	Alphanumeric
DoTS ID	DT.529646	Alphanumeric with decimal
NIA Mouse Gene Index ID	U041021	Alphanumeric with dash
UniGene ID	4394	Numeric
UniSTS	125993	Numeric
Gene trap IDs
Alleles & Sequences	See Cell Line Creators and Accession IDs for specific examples.	Alphanumeric, some with special characters (e.g., dash or underscore)

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