More Help

This help document provides examples of accession IDs that may result from using MGI tools (Batch Query, Quick Search) or MGI query forms as well as samples of accession IDs to use for those queries.

Examples of accession ID results using the Quick Search

• Types of IDs that may appear under Genome Features


• Markers
• Alleles
• Vocabulary
• Sequences
• Gene Traps
• Non-mouse


• Types of IDs that may appear under Vocabulary Terms


• Types of IDs that may appear under Other Results by ID
• References
• Probes
• Expression Image
• SNP
• Mapping

Markers

MGI:96677 : MGI ID

16590 : EntrezGene

247073 : UniGene

4394 : Homologene

MI0000248 : miRBASE

10094A-C10 : old name (for Vmn1r37)

Alleles

Apoe^tm1Bres : Allele symbol

Pax3^tm1Buck : Allele synonym

MGI:1856798 : Allele ID

OST170322 : Cell line ID (Lexicon Genetics)

10094A-C10 : Cell line ID (Regeneron-KOMP)

EUCE0060g02.q1k5SPK : DNA Sequence for a gene-trapped allele

Vocabulary

GO:0004713 : Gene Ontology (GO Browser)

172800 : OMIM

IPR003599 : Interpro

PIRSF015599 : Protein Information Resource SuperFamily

MP:0005392 : Mammalian Phenotype (MP Browser)

GO:0004713 : Gene Ontology

Sequences

OTTMUSG00000015949 : VEGA Gene Model

ENSMUSG00000005672 : Ensembl Gene Model

14894 : NCBI Gene Model

NM_001122899 : RefSeq

P05532   or  A2AKJ2 : UniProt, EBI

U42467   or  AA212080 : GenBank, EMBL, DDBJ

TC1572427 : DFCI

DT.529646 : DoTS

U041021 : NIA

Gene Traps

LST083 : BayGenomics

FHCRC-GT-S5-7F1 : FHCRC

G017D05 : GGTC

OST284713 : Lexicon

CH0515 : SIGTR

IST10185G1BBF1 : TIGM

CMHD-GT_420F3-3 : CMHD

PST173-1 : ESDB

Ayu21-T291 : EGTC

GC0196 : TIGEM

Non-mouse IDs

HGNC:6342 or HGNC:2394 : HGNC - Human

123610 : OMIM - Human

1411 : Entrez Gene - Human

P05813 : UniProt, EBI - Human

NM_005208 : RefSeq - Human

Miscellaneous

2.7.10.1 : EC

1FRB : PDB

Types of IDs that may appear under Vocabulary Terms

MP:0005392 : Mammalian Phenotype Vocabulary (MP Browser)

GO:00047131 : Gene Ontology (GO Browser)

172800 : OMIM (Human Disease Browser)

IPR003599 : InterPro Protein Database

PIRSF015599 : Protein Information Resource SuperFamily

Types of IDs that may appear under Other Results by ID

References

J:62345 : MGI

8825637 : PubMed

MGI:1858784 : MGI

10.1006/bbrc.1999.1563 : DOI

Probes

MGI:200469 : MGI

14049 : MGC

303709   or  30026443 : IMAGE

ma05h07.r1 : WashU

560822 : ATCC

RP23-100A23 : RPCI-23

125993 : UniSTS

K0419D07 : NIA

H3075B07 : NIA 15K

H4019E10 : NIA 7.4K

M5C1016J08 : RIKEN or RIKEN FANTOM

RP24-107E24 : RPCI-24

D11Mit10 : BROAD

Expression

MA:0002769 : Adult Mouse Anatomy

MGI:1339360 : Antibody

MGI:1339359 : Antigen

MGI:1934267 : Expression assay

Expression Image

MGI:3501363 : MGI

SNP

rs3021544 ss1275070 : dbSNP

Mapping

MGD-CREX-2231 : MGI

Top

Examples of accession IDs to use in MGI queries

Note: Using the listed ID may not yield a result on any given day because of data curation and load timing.

If you query by...	The result is...	For example...	The format is...
Allele
Allele symbol	Alleles, Sequences	Apoe<tm1Bres>	Alphanumeric; some with brackets, some with decimals
Allele synonym		Pax3<tm1Buck>
MGI Allele ID		MGI:1856798
Cell line ID		OST170322
DNA Sequence for gene-trapped allele		EUCE0060g02.q1k5SPK
Expression
MGI assay ID	Expression	MGI:1339505	Alphanumeric with colon
Genes & Markers
MGI Marker ID	Genes, Sequences	MGI:87895, MGD-MRK-1672	Alphanumeric with colon
BROAD		D1184	Alphanumeric
dbGSS mutant cell line ID		FHCRC-GT-S15-11C1	Alphanumeric
DFCI Mouse Gene Index ID		TC1572427	Alphanumeric
DoTS ID		DT.529646	Alphanumeric with decimal
E.C. number		2.7.1.112	Numeric with decimals
Ensembl ID		ENSMUSG00000005672	Alphanumeric
Entrez ID		16590	Numeric
NIA Mouse Gene Index ID		U041021	Alphanumeric
UniGene ID		4394	Numeric
UniProt		P6281	Alphanumeric
UniSTS		125993	Numeric
VEGA ID		OTTMUSG00000010935	Alphanumeric
Gene Classifications
Gene Ontology (GO) ID	Markers & vocabulary terms	GO:00302641	Alphanumeric with colon
Human Diseases
OMIM	Alleles & disease terms	168600	Numeric
Orthology Relationships
E.C. Number	Orthology	2.7.1.112	Numeric with decimals
Ensembl ID		ENSMUSG00000005672	Alphanumeric
Entrez Gene ID		56063	Numeric
Homologene		20151	Numeric
HGNC ID		HGNC:28837	Alphanumeric with colon
RefSeq ID		NM_09118	Alphanumeric with underscore
VEGA ID		OTTMUSG00000010935	Alphanumeric
Probes/Clones
Affymetrix tissue/probe ID	Probes/Clones & Sequences	10379153 1424714_at 1451461_a_at	Numeric or alphanumeric with underscore(s)
ATCC clone ID		719230	Numeric
BROAD		D1184	Alphanumeric
GenBank/EMBL/DDBJ ID		AA212080	Alphanumeric
IMAGE clone ID		MGI:200469	Alphanumeric with colon
MGC		14049	Numeric
RIKEN clone ID		MGI:2420147	Alphanumeric with colon
RPCI		RP23-100A23	Alphanumeric
Protein Domains
InterPro ID	Markers	IPR003599	Alphanumeric
Protein Structures
PDB ID	Markers	1FRB	Alphanumeric
Protein Superfamilies
PIRSF ID	Protein family term	PIRSF016527	Alphanumeric
Protein Ontology
Pro ID	Markers & Sequences	PR:000003753	Alphanumeric
References
PubMed ID	References	M14791, 8825637	Alphanumeric or numeric
PubMed ID		99236653	Numeric
DOI ID		10.1006/bbrc.1999.1563	Alphanumeric or numeric
MGI reference ID		MGI:15219	Alphanumeric with colon
J number (Every MGI stored reference has a number of the form J:nnnnn..).		J:14135	Alphanumeric with colon
SNPs
dbSNP	RefSNPs & assay IDs	rs3021544 ss12750703	Alphanumeric
Sequences
GenBank/EMBL/DDBJ ID	Markers, Probes/Clones, Sequences	S40294	Alphanumeric
RefSeq ID	Markers & Sequences	NM_0211099	Alphanumeric with underscore
Ensembl ID		ENSMUSG00000005672 ENSMUSP00000080991	Alphanumeric
SWISS-PROT ID		P05532	Alphanumeric
TrEMBL ID		AAA37420	Alphanumeric
DFCI Mouse Gene Index ID		TC1572427	Alphanumeric
DoTS ID		DT.529646	Alphanumeric with decimal
NIA Mouse Gene Index ID		U041021	Alphanumeric with dash
UniGene ID		4394	Numeric
UniSTS		125993	Numeric
VEGA ID		OTTMUSG00000015949 OTTMUST00000084765	Alphanumeric
Gene trap IDs	Alleles & Sequences	See Cell Line Creators and Accession IDs for specific examples.	Alphanumeric, some with special characters (e.g., dash or underscore)

Top