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rs27319024 SNP Detail
Summary
  • ID
    rs27319024 dbSNP
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:161769660 (GRCm38)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTGTG ATGAACTAAG AAAACAGGTC
    R
    TTGCTGAGTT TTGGATATTC CATTG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37528949 NES08868440 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G G A A A
ss45243110 mCV23725115 ABI CRAMUS_MOUSE f SNP A A A G
ss148162394 ENSMUSSNP1600656 ENSEMBL ENSEMBL_Sanger f SNP A A
ss320595302 CHEV_2_161595396 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27319024 SNP A A A A A A A G G A A A A G G A A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:161769660 (GRCm38) rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ptprt protein tyrosine phosphatase, receptor type, T NM_021464
MGI Seq Detail
Intron
NM_001291149
MGI Seq Detail
Intron
NM_001291150
MGI Seq Detail
Intron
NM_001291151
MGI Seq Detail
Intron
XM_006498995
MGI Seq Detail
Intron
XM_006498996
MGI Seq Detail
Intron
XM_006498997
MGI Seq Detail
Intron
XM_006498998
MGI Seq Detail
Intron
XM_006498999
MGI Seq Detail
Intron
XM_006499000
MGI Seq Detail
Intron
XM_006499001
MGI Seq Detail
Intron
XM_006499002
MGI Seq Detail
Intron
XM_006499003
MGI Seq Detail
Intron
XM_006499004
MGI Seq Detail
Intron
XM_006499005
MGI Seq Detail
Intron
XM_006499006
MGI Seq Detail
Intron
XM_006499007
MGI Seq Detail
Intron
XM_006499008
MGI Seq Detail
Intron
XM_006499009
MGI Seq Detail
Intron
XM_006499010
MGI Seq Detail
Intron
XM_006499011
MGI Seq Detail
Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/10/2018
MGI 6.12
The Jackson Laboratory