About   Help   FAQ
Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Hoxa9
homeobox A9
MGI:96180

24 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47707218
MPD | dbSNP | MGI SNP Detail
Chr6:52222936fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : 164 bp downstream of
Sndy1 : within coordinates of
1SNP         A ATAT              A             A         A   A A/T
rs47671025
MPD | dbSNP | MGI SNP Detail
Chr6:52223506fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : within coordinates of
Sndy1 : within coordinates of
1SNP  G GG     GGA               A             A        AA   A A/G
rs50618337
MPD | dbSNP | MGI SNP Detail
Chr6:52224093fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : mRNA-UTR
Sndy1 : within coordinates of
1SNP  CCCC   C CCT               C             C        CC   C C/T
rs49637788
MPD | dbSNP | MGI SNP Detail
Chr6:52225017fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Intron
Sndy1 : within coordinates of
1SNP  AA       AAAA              A             A        AG   A A/G
rs50768324
MPD | dbSNP | MGI SNP Detail
Chr6:52225119fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Intron
Sndy1 : within coordinates of
1SNP  TGTT     TTG               G             G        G    G G/T
rs48024775
MPD | dbSNP | MGI SNP Detail
Chr6:52225408fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Intron
Sndy1 : within coordinates of
1SNP  AA A     AAAA              A             A        AG   A A/G
rs46910944
MPD | dbSNP | MGI SNP Detail
Chr6:52225862fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Coding-Synonymous
Sndy1 : within coordinates of
1SNP         C                                          TC   T C/T
rs51160505
MPD | dbSNP | MGI SNP Detail
Chr6:52226039fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Coding-Synonymous
Sndy1 : within coordinates of
1SNP  AGA      AAG               G             G        GG   G A/G
rs47663907
MPD | dbSNP | MGI SNP Detail
Chr6:52226750fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : mRNA-UTR
Sndy1 : within coordinates of
1SNP  TTTT     TTCT              T             T        TC   T C/T
rs48094681
MPD | dbSNP | MGI SNP Detail
Chr6:52226956fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : mRNA-UTR
Sndy1 : within coordinates of
1SNP  GGGG   G GGAG              G             G        GG   G A/G
rs30312708
MPD | dbSNP | MGI SNP Detail
Chr6:52227401fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
2SNP TC   C    C                                               C/T
rs29872040
MPD | dbSNP | MGI SNP Detail
Chr6:52227456fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
2SNP CT        T                                               C/T
rs49300437
MPD | dbSNP | MGI SNP Detail
Chr6:52227831fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
1SNP  AAAA   A AAGA              A             A        AG   A A/G
rs47230866
MPD | dbSNP | MGI SNP Detail
Chr6:52228632fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
1SNP  AAAA     AATA              A             A        AA   A A/T
rs30474503
MPD | dbSNP | MGI SNP Detail
Chr6:52228730fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
2SNP GA   A    A                                               A/G
rs30855891
MPD | dbSNP | MGI SNP Detail
Chr6:52228862fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
2SNP T    A    A                                     A         A/T
rs30016291
MPD | dbSNP | MGI SNP Detail
Chr6:52229323fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : Locus-Region
Sndy1 : within coordinates of
3SNPAACACCC  A CCA                             A        AA   A A/C
rs30710239
MPD | dbSNP | MGI SNP Detail
Chr6:52229374fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : within coordinates of
Sndy1 : within coordinates of
2SNPCCG   G    G                                               C/G
rs30358312
MPD | dbSNP | MGI SNP Detail
Chr6:52229533fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : within coordinates of
Sndy1 : within coordinates of
3SNPTTT   A    T       T                        T              A/T
rs29966768
MPD | dbSNP | MGI SNP Detail
Chr6:52230810fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : within coordinates of
Hoxa10 : Intron
Mir196b : Locus-Region
Sndy1 : within coordinates of
1SNPAAG        G                                               A/G
rs30452817
MPD | dbSNP | MGI SNP Detail
Chr6:52230872fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : within coordinates of
Hoxa10 : Intron
Mir196b : Locus-Region
Sndy1 : within coordinates of
2SNPAAG   G    G                                               A/G
rs46345112
MPD | dbSNP | MGI SNP Detail
Chr6:52231680fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : 591 bp upstream of
Hoxa10 : mRNA-UTR
Mir196b : Locus-Region
Sndy1 : within coordinates of
1SNP  G        G                                               G
rs49673943
MPD | dbSNP | MGI SNP Detail
Chr6:52232228fHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : 1139 bp upstream of
Hoxa10 : mRNA-UTR
Sndy1 : within coordinates of
1SNP  CCCC   C CCC               C             C        CT   C C/T
rs3023068
MPD | dbSNP | MGI SNP Detail
Chr6:52232248rHdlk : within coordinates of
Hdp1 : within coordinates of
Hoxa9 : 1159 bp upstream of
Hoxa10 : mRNA-UTR
Sndy1 : within coordinates of
3SNPAAG GGGAGGGGGGAAGAGGGGAGGAGGGAGGGGGAGGGGGGGAGAAGGGAAA AGGAGA/G

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/18/2014
MGI 5.20
The Jackson Laboratory