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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Hmga1
high mobility group AT-hook 1
MGI:96160

47 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs6281071
MPD | dbSNP | MGI SNP Detail
Chr17:27554807fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
3SNP  C  TCC C CC/T
rs235934822
MPD | dbSNP | MGI SNP Detail
Chr17:27554951fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
1SNP         C AA/C
rs3654418
MPD | dbSNP | MGI SNP Detail
Chr17:27555205fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
3SNPTTT  C T T CC/T
rs107991053
MPD | dbSNP | MGI SNP Detail
Chr17:27556199fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
1SNP         T CC/T
rs255111633
MPD | dbSNP | MGI SNP Detail
Chr17:27556465fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
1SNP         C TC/T
rs263491074
MPD | dbSNP | MGI SNP Detail
Chr17:27556818fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hmga1 : mRNA-UTR
Hst4 : within coordinates of
1SNP         C TC/T
rs108481809
MPD | dbSNP | MGI SNP Detail
Chr17:27557931fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         A TA/T
rs248737756
MPD | dbSNP | MGI SNP Detail
Chr17:27558121fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         C TC/T
rs107610189
MPD | dbSNP | MGI SNP Detail
Chr17:27558134fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         C TC/T
rs108349877
MPD | dbSNP | MGI SNP Detail
Chr17:27558294fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         C TC/T
rs3659325
MPD | dbSNP | MGI SNP Detail
Chr17:27559012fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
4SNPC C  T C C CC/T
rs33792378
MPD | dbSNP | MGI SNP Detail
Chr17:27559180fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP   TT   CTCCC/T
rs33792377
MPD | dbSNP | MGI SNP Detail
Chr17:27559345fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP   T     TGGG/T
rs3661707
MPD | dbSNP | MGI SNP Detail
Chr17:27559388fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
4SNPTTT  A T T TA/T
rs51513800
MPD | dbSNP | MGI SNP Detail
Chr17:27559613fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Coding-Synonymous
Hst4 : within coordinates of
1SNP A     A    A
rs224418103
MPD | dbSNP | MGI SNP Detail
Chr17:27559791fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         C TC/T
rs33792376
MPD | dbSNP | MGI SNP Detail
Chr17:27560073fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP   T     TCCC/T
rs33792375
MPD | dbSNP | MGI SNP Detail
Chr17:27560330fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP   TT    TCCC/T
rs108645426
MPD | dbSNP | MGI SNP Detail
Chr17:27560385fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         T CC/T
rs235975226
MPD | dbSNP | MGI SNP Detail
Chr17:27560386fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         G AA/G
rs262798696
MPD | dbSNP | MGI SNP Detail
Chr17:27560429fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         T AA/T
rs108548856
MPD | dbSNP | MGI SNP Detail
Chr17:27560492fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP T     G    G/T
rs108800571
MPD | dbSNP | MGI SNP Detail
Chr17:27560518fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         G AA/G
rs108489487
MPD | dbSNP | MGI SNP Detail
Chr17:27560538fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP C          C
rs246578022
MPD | dbSNP | MGI SNP Detail
Chr17:27560652fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         A GA/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs265684844
MPD | dbSNP | MGI SNP Detail
Chr17:27560816fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         G AA/G
rs48559634
MPD | dbSNP | MGI SNP Detail
Chr17:27560858fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP GG    G G GG
rs47475266
MPD | dbSNP | MGI SNP Detail
Chr17:27561394fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP CC    C C CC
rs46193253
MPD | dbSNP | MGI SNP Detail
Chr17:27561521fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP CC    C C CC
rs33792374
MPD | dbSNP | MGI SNP Detail
Chr17:27561678fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP   C     CTTC/T
rs33259186
MPD | dbSNP | MGI SNP Detail
Chr17:27561984fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
3SNP  C  G C C GC/G
rs214357792
MPD | dbSNP | MGI SNP Detail
Chr17:27562021fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         C TC/T
rs237776279
MPD | dbSNP | MGI SNP Detail
Chr17:27562207fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
1SNP         G AA/G
rs33791543
MPD | dbSNP | MGI SNP Detail
Chr17:27562421fDel(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Intron
Hst4 : within coordinates of
2SNP   C     CTTC/T
rs107913589
MPD | dbSNP | MGI SNP Detail
Chr17:27563855fAI413582 : mRNA-UTR
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
1SNP         C AA/C
rs108519892
MPD | dbSNP | MGI SNP Detail
Chr17:27563877fAI413582 : mRNA-UTR
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
1SNP         C TC/T
rs29504450
MPD | dbSNP | MGI SNP Detail
Chr17:27563947fAI413582 : mRNA-UTR
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
3SNP GG  A   G AA/G
rs33791541
MPD | dbSNP | MGI SNP Detail
Chr17:27564093fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
2SNP   G    GGAAA/G
rs107919205
MPD | dbSNP | MGI SNP Detail
Chr17:27564105fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : Locus-Region
Hst4 : within coordinates of
1SNP         G AA/G
rs13473273
MPD | dbSNP | MGI SNP Detail
Chr17:27564233rAI413582 : Coding-NonSynonymous
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 559 bp downstream of
Hst4 : within coordinates of
3SNP C   T   C CC/T
rs29517124
MPD | dbSNP | MGI SNP Detail
Chr17:27564276fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 602 bp downstream of
Hst4 : within coordinates of
3SNP T   C T T CC/T
rs33609671
MPD | dbSNP | MGI SNP Detail
Chr17:27564447fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 773 bp downstream of
Hst4 : within coordinates of
3SNP AA  G A A GA/G
rs33291549
MPD | dbSNP | MGI SNP Detail
Chr17:27564769fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 1095 bp downstream of
Hst4 : within coordinates of
2SNP AG  G G    A/G
rs107682592
MPD | dbSNP | MGI SNP Detail
Chr17:27564997fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 1323 bp downstream of
Hst4 : within coordinates of
1SNP         A GA/G
rs33422493
MPD | dbSNP | MGI SNP Detail
Chr17:27565033fAI413582 : Intron
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 1359 bp downstream of
Hst4 : within coordinates of
3SNP GA  G A A GA/G
rs242675941
MPD | dbSNP | MGI SNP Detail
Chr17:27565438fAI413582 : Intron
C130040N14Rik : within coordinates of
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 1764 bp downstream of
Hst4 : within coordinates of
1SNP         C GC/G
rs260496039
MPD | dbSNP | MGI SNP Detail
Chr17:27565622fAI413582 : Intron
C130040N14Rik : within coordinates of
Del(17D17Jcs40-D17Mit198)7Jcs : within coordinates of
hlb156 : within coordinates of
Hmga1 : 1948 bp downstream of
Hst4 : within coordinates of
1SNP         G CC/G

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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory