Genome Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).

Symbol Name ID

Hmga1 high mobility group AT-hook 1 MGI:96160

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13 matching SNPs displayed

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 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.

SNP ID (dbSNP Build 128)	Map Position (NCBI Build 37)		Gene : dbSNP Function Class	Assays (ss)	Variation Type											Allele Summary (all strains)
rs6281071 MPD | dbSNP | MGI SNP Detail	Chr17:27691752	f	Hmga1 : Locus-Region	1	SNP						T	C				C/T
rs3654418 MPD | dbSNP | MGI SNP Detail	Chr17:27692150	f	Hmga1 : Locus-Region	2	SNP	T	T	T			C		T			C/T
rs3659325 MPD | dbSNP | MGI SNP Detail	Chr17:27695957	f	Hmga1 : Intron	2	SNP	C		C			T		C			C/T
rs33792378 MPD | dbSNP | MGI SNP Detail	Chr17:27696125	f	Hmga1 : Intron	1	SNP				T	T				C	C	C/T
rs33792377 MPD | dbSNP | MGI SNP Detail	Chr17:27696290	f	Hmga1 : Intron	1	SNP				T						G	G/T
rs3661707 MPD | dbSNP | MGI SNP Detail	Chr17:27696333	f	Hmga1 : Intron	2	SNP	T	T	T			A		T			A/T
rs33792376 MPD | dbSNP | MGI SNP Detail	Chr17:27697018	f	Hmga1 : Intron	1	SNP				T						C	C/T
rs33792375 MPD | dbSNP | MGI SNP Detail	Chr17:27697275	f	Hmga1 : Intron	1	SNP				T	T					C	C/T
rs33792374 MPD | dbSNP | MGI SNP Detail	Chr17:27698623	f	Hmga1 : Intron	1	SNP				C						T	C/T
rs33259186 MPD | dbSNP | MGI SNP Detail	Chr17:27698929	f	AI413582 : Locus-Region Hmga1 : Intron	1	SNP			C			G		C			C/G
rs33791543 MPD | dbSNP | MGI SNP Detail	Chr17:27699366	f	AI413582 : Locus-Region Hmga1 : Intron	1	SNP				C						T	C/T
rs29504450 MPD | dbSNP | MGI SNP Detail	Chr17:27700892	f	AI413582 : mRNA-UTR Hmga1 : Locus-Region	1	SNP		G	G			A					A/G
rs33791541 MPD | dbSNP | MGI SNP Detail	Chr17:27701038	f	AI413582 : Intron Hmga1 : Locus-Region	1	SNP				G					G	A	A/G