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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
H2-D1 histocompatibility 2, D region locus 1 MGI:95896 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs31019432 MPD | dbSNP | MGI SNP Detail | Chr17:35399459 | f | H2-D1 : Locus-Region | 1 | SNP | C | T | C/T | ||||||||||||||||||||||||||
| rs33866355 MPD | dbSNP | MGI SNP Detail | Chr17:35399540 | f | H2-D1 : Locus-Region | 1 | SNP | A | G | A/G | ||||||||||||||||||||||||||
| rs30723617 MPD | dbSNP | MGI SNP Detail | Chr17:35399559 | f | H2-D1 : Locus-Region | 1 | SNP | G | C | C/G | ||||||||||||||||||||||||||
| rs30973383 MPD | dbSNP | MGI SNP Detail | Chr17:35399565 | f | H2-D1 : Locus-Region | 1 | SNP | G | A | A/G | ||||||||||||||||||||||||||
| rs51351154 MPD | dbSNP | MGI SNP Detail | Chr17:35399604 | f | H2-D1 : Locus-Region | 1 | SNP | C | C | T | C | T | T | T | C | T | T | T | C/T | |||||||||||||||||
| rs49421356 MPD | dbSNP | MGI SNP Detail | Chr17:35399608 | f | H2-D1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C/T | ||||||||||||||||||
| rs46958935 MPD | dbSNP | MGI SNP Detail | Chr17:35400443 | f | H2-D1 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | A | G | A/G | |||||||||||||||
| rs51905024 MPD | dbSNP | MGI SNP Detail | Chr17:35400588 | f | H2-D1 : Coding-NonSynonymous | 1 | SNP | A | A | A | C | A | A | C | A/C | |||||||||||||||||||||
| rs48010769 MPD | dbSNP | MGI SNP Detail | Chr17:35400655 | f | H2-D1 : Intron | 1 | SNP | T | C | C/T | ||||||||||||||||||||||||||
| rs45916943 MPD | dbSNP | MGI SNP Detail | Chr17:35400875 | f | H2-D1 : Coding-Synonymous | 1 | SNP | C | C | A | C | C | C | A | A/C | |||||||||||||||||||||
| rs46745301 MPD | dbSNP | MGI SNP Detail | Chr17:35400932 | f | H2-D1 : Coding-Synonymous | 1 | SNP | A | A | A | G | A | A/G | |||||||||||||||||||||||
| rs45956338 MPD | dbSNP | MGI SNP Detail | Chr17:35401316 | f | H2-D1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | C | T | T | C/T | ||||||||||||||||
| rs50534690 MPD | dbSNP | MGI SNP Detail | Chr17:35401347 | f | H2-D1 : Intron | 1 | SNP | C | T | T | T | T | T | T | T | C | C | C | T | C/T | ||||||||||||||||
| rs50199577 MPD | dbSNP | MGI SNP Detail | Chr17:35401408 | f | H2-D1 : Intron | 1 | SNP | A | G | G | G | G | G | G | G | A | G | G | G | A | G | A/G | ||||||||||||||
| rs46245254 MPD | dbSNP | MGI SNP Detail | Chr17:35401427 | f | H2-D1 : Intron | 1 | SNP | G | A | G | A | G | G | G | A | G | G | G | G | A/G | ||||||||||||||||
| rs46554983 MPD | dbSNP | MGI SNP Detail | Chr17:35401434 | f | H2-D1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | T | G | G | T | G/T | |||||||||||||||
| rs52217775 MPD | dbSNP | MGI SNP Detail | Chr17:35401896 | f | H2-D1 : Intron | 1 | SNP | A | A | A | A | A | A | A | C | A | A | A | C | A | A/C | |||||||||||||||
| rs49985788 MPD | dbSNP | MGI SNP Detail | Chr17:35402002 | f | H2-D1 : Intron | 1 | SNP | C | C | C | C | T | T | C | C | T | C/T | |||||||||||||||||||
| rs51149399 MPD | dbSNP | MGI SNP Detail | Chr17:35402015 | f | H2-D1 : Intron | 1 | SNP | G | G | G | G | C | G | C | G | C | C | C | C/G | |||||||||||||||||
| rs48269923 MPD | dbSNP | MGI SNP Detail | Chr17:35402039 | f | H2-D1 : Intron | 1 | SNP | C | G | G | G | G | G | C | C | C/G | ||||||||||||||||||||
| rs48375246 MPD | dbSNP | MGI SNP Detail | Chr17:35402204 | f | H2-D1 : Intron | 1 | SNP | A | G | G | G | A | G | G | A | G | A | G | A | A | G | A/G | ||||||||||||||
| rs48080567 MPD | dbSNP | MGI SNP Detail | Chr17:35402216 | f | H2-D1 : Intron | 1 | SNP | T | T | T | T | T | A | T | A | T | A | A | A | A | T | A | A/T | |||||||||||||
| rs30824927 MPD | dbSNP | MGI SNP Detail | Chr17:35402240 | f | H2-D1 : Intron | 1 | SNP | T | T | C | T | C | C/T | |||||||||||||||||||||||
| rs30575340 MPD | dbSNP | MGI SNP Detail | Chr17:35402271 | f | H2-D1 : Intron | 1 | SNP | T | T | A | T | A | A/T | |||||||||||||||||||||||
| rs8239795 MPD | dbSNP | MGI SNP Detail | Chr17:35402558 | f | H2-D1 : Intron | 1 | SNP | G | G | G | A | G | G | G | G | G | A/G | |||||||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs8237970 MPD | dbSNP | MGI SNP Detail | Chr17:35402574 | f | H2-D1 : Intron | 1 | SNP | G | G | G | G | G | G | T | G | G | G | G | G/T | |||||||||||||||||
| rs16794744 MPD | dbSNP | MGI SNP Detail | Chr17:35402612 | f | H2-D1 : Intron | 1 | SNP | A | G | A | A | G | A | A | A | A | A | A | A | A | A | G | A | A/G | ||||||||||||
| rs16794745 MPD | dbSNP | MGI SNP Detail | Chr17:35402622 | f | H2-D1 : Intron | 1 | SNP | T | A | T | T | A | T | T | A | T | T | T | A | T | A/T | |||||||||||||||
| rs8237971 MPD | dbSNP | MGI SNP Detail | Chr17:35402632 | f | H2-D1 : Intron | 1 | SNP | C | T | C | T | C | T | C | C/T | |||||||||||||||||||||
| rs8237972 MPD | dbSNP | MGI SNP Detail | Chr17:35402639 | f | H2-D1 : Intron | 9 | Mixed | - | ? | A | ? | A | A | A | A | ? | ? | - | C | -/A/C/G/T | ||||||||||||||||
| rs8237981 MPD | dbSNP | MGI SNP Detail | Chr17:35402655 | f | H2-D1 : Intron | 1 | SNP | G | A | A | A | G | A | A | A | A | A | G | A | A/G | ||||||||||||||||
| rs8237982 MPD | dbSNP | MGI SNP Detail | Chr17:35402659 | f | H2-D1 : Intron | 1 | SNP | C | A | A | A | C | A | A | C | A | A | C | A | A/C | ||||||||||||||||
| rs8237983 MPD | dbSNP | MGI SNP Detail | Chr17:35402706 | f | H2-D1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | A/G | ||||||||||||||||
| rs8237984 MPD | dbSNP | MGI SNP Detail | Chr17:35402742 | f | H2-D1 : Coding-Synonymous | 1 | SNP | A | C | A | A | A | A | A | A | A | A/C | |||||||||||||||||||
| rs8237985 MPD | dbSNP | MGI SNP Detail | Chr17:35402771 | f | H2-D1 : Coding-NonSynonymous | 1 | SNP | T | G | G | G | T | G | G | G | G | G | T | G | G/T | ||||||||||||||||
| rs8237986 MPD | dbSNP | MGI SNP Detail | Chr17:35402843 | f | H2-D1 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | A/G | ||||||||||||||||
| rs47925799 MPD | dbSNP | MGI SNP Detail | Chr17:35403235 | f | H2-D1 : Coding-Synonymous | 1 | SNP | G | G | G | G | A | G | G | G | G | A | G | G | A/G | ||||||||||||||||
| rs47707436 MPD | dbSNP | MGI SNP Detail | Chr17:35403348 | f | H2-D1 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | G | C/G | ||||||||||||||||
| rs47823544 MPD | dbSNP | MGI SNP Detail | Chr17:35403811 | f | H2-D1 : Coding-NonSynonymous | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | C/G | |||||||||||||||
| rs13467993 MPD | dbSNP | MGI SNP Detail | Chr17:35404032 | f | H2-D1 : mRNA-UTR | 1 | SNP | C | T | C | T | C/T | ||||||||||||||||||||||||
| rs30763065 MPD | dbSNP | MGI SNP Detail | Chr17:35404221 | f | H2-D1 : mRNA-UTR | 1 | SNP | G | T | G | G/T | |||||||||||||||||||||||||
| rs48598068 MPD | dbSNP | MGI SNP Detail | Chr17:35404591 | f | H2-D1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | G | C | C/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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