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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Cldn16
claudin 16
MGI:2148742

96 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs236733379
MPD | dbSNP | MGI SNP Detail
Chr16:26461172fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP          C  T   C/T
rs46224479
MPD | dbSNP | MGI SNP Detail
Chr16:26462835fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     G  G      A A/G
rs51351081
MPD | dbSNP | MGI SNP Detail
Chr16:26463069fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  A      G A/G
rs50314820
MPD | dbSNP | MGI SNP Detail
Chr16:26463268fCldn16 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  A      G A/G
rs48623187
MPD | dbSNP | MGI SNP Detail
Chr16:26463319fCldn16 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  A      T A/T
rs46197362
MPD | dbSNP | MGI SNP Detail
Chr16:26463403fCldn16 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  A      G A/G
rs46921921
MPD | dbSNP | MGI SNP Detail
Chr16:26463473fCldn16 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     T  T      G G/T
rs47679620
MPD | dbSNP | MGI SNP Detail
Chr16:26463563fCldn16 : Coding-Synonymous
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     G  G      A A/G
rs45729269
MPD | dbSNP | MGI SNP Detail
Chr16:26463671fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  G      G A/G
rs51004888
MPD | dbSNP | MGI SNP Detail
Chr16:26463843fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     C  C      T C/T
rs51138916
MPD | dbSNP | MGI SNP Detail
Chr16:26463894fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A CA      C A/C
rs48104492
MPD | dbSNP | MGI SNP Detail
Chr16:26463924fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     G  G      C C/G
rs45748192
MPD | dbSNP | MGI SNP Detail
Chr16:26464012fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  A      G A/G
rs47211471
MPD | dbSNP | MGI SNP Detail
Chr16:26464081fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     T  T      C C/T
rs46609713
MPD | dbSNP | MGI SNP Detail
Chr16:26464152fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     G  G      AGA/G
rs49643927
MPD | dbSNP | MGI SNP Detail
Chr16:26464263fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     G  G      A A/G
rs48286672
MPD | dbSNP | MGI SNP Detail
Chr16:26464440fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  C      C A/C
rs51459797
MPD | dbSNP | MGI SNP Detail
Chr16:26464805fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     C         T C/T
rs49764226
MPD | dbSNP | MGI SNP Detail
Chr16:26465125fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     C  C      A A/C
rs49114966
MPD | dbSNP | MGI SNP Detail
Chr16:26465929fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAGAAGA AA AGAA/G
rs50355863
MPD | dbSNP | MGI SNP Detail
Chr16:26466077fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCT C T     C   C C/T
rs48347640
MPD | dbSNP | MGI SNP Detail
Chr16:26466102fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCC CC C CC CTCC/T
rs256651289
MPD | dbSNP | MGI SNP Detail
Chr16:26466654fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP          C  T   C/T
rs47490575
MPD | dbSNP | MGI SNP Detail
Chr16:26469430fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT    C  C        C/T
rs51749697
MPD | dbSNP | MGI SNP Detail
Chr16:26469670fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG    C  C        C/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs51971499
MPD | dbSNP | MGI SNP Detail
Chr16:26470257fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG  G A  G     GGAA/G
rs51761683
MPD | dbSNP | MGI SNP Detail
Chr16:26471340fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT    G  G G  T   G/T
rs51595677
MPD | dbSNP | MGI SNP Detail
Chr16:26472533fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG    A  A        A/G
rs45645148
MPD | dbSNP | MGI SNP Detail
Chr16:26472761fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG    T  T        G/T
rs47746268
MPD | dbSNP | MGI SNP Detail
Chr16:26473368fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP     A  C        A/C
rs51535864
MPD | dbSNP | MGI SNP Detail
Chr16:26473601fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA    G  G        A/G
rs45684087
MPD | dbSNP | MGI SNP Detail
Chr16:26473612fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG    A  A        A/G
rs51168599
MPD | dbSNP | MGI SNP Detail
Chr16:26474112fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC    G  G      G C/G
rs51141444
MPD | dbSNP | MGI SNP Detail
Chr16:26474785fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC    G  G      GGC/G
rs50974868
MPD | dbSNP | MGI SNP Detail
Chr16:26475548fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT    G  G       GG/T
rs50304331
MPD | dbSNP | MGI SNP Detail
Chr16:26476164fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAACAACA AA AAAA/C
rs48077617
MPD | dbSNP | MGI SNP Detail
Chr16:26476226fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGAGGAG GG GGGA/G
rs47155788
MPD | dbSNP | MGI SNP Detail
Chr16:26476265fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTCTTCT TT TTTC/T
rs48688530
MPD | dbSNP | MGI SNP Detail
Chr16:26476333fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAA AAT  AA ATAA/T
rs47460528
MPD | dbSNP | MGI SNP Detail
Chr16:26476459fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGG GGTG GG GGGG/T
rs49178087
MPD | dbSNP | MGI SNP Detail
Chr16:26476852fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCC CCTC CC CTCC/T
rs46741941
MPD | dbSNP | MGI SNP Detail
Chr16:26476902fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAACAACA AA AAAA/C
rs50159522
MPD | dbSNP | MGI SNP Detail
Chr16:26477247fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGG GGTG GG TTGG/T
rs50668107
MPD | dbSNP | MGI SNP Detail
Chr16:26477602fCldn16 : Coding-NonSynonymous
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCGCCGC CC GGCC/G
rs48899920
MPD | dbSNP | MGI SNP Detail
Chr16:26477661fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCTCCTC CC CTCC/T
rs46999699
MPD | dbSNP | MGI SNP Detail
Chr16:26477707fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTCTTCT TT TTTC/T
rs49683238
MPD | dbSNP | MGI SNP Detail
Chr16:26477750fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGAGGAG GG GGGA/G
rs50364316
MPD | dbSNP | MGI SNP Detail
Chr16:26477783fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGCGGCG GG GGGC/G
rs49443305
MPD | dbSNP | MGI SNP Detail
Chr16:26477785fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGGGGGG GG AGGA/G
rs48080663
MPD | dbSNP | MGI SNP Detail
Chr16:26477996fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCTCCTC CC CCCC/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs46638205
MPD | dbSNP | MGI SNP Detail
Chr16:26478074fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAA AAGA AA AAAA/G
rs46889317
MPD | dbSNP | MGI SNP Detail
Chr16:26478657fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCCCCCC CC TCCC/T
rs50783404
MPD | dbSNP | MGI SNP Detail
Chr16:26478736fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAAAAAA AA GAAA/G
rs47174369
MPD | dbSNP | MGI SNP Detail
Chr16:26478776fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGAGGAG GG GGGA/G
rs45663264
MPD | dbSNP | MGI SNP Detail
Chr16:26478844fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGGGGGG GG AGGA/G
rs48407401
MPD | dbSNP | MGI SNP Detail
Chr16:26478862fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTCTTCT TT TTTC/T
rs50084134
MPD | dbSNP | MGI SNP Detail
Chr16:26478938fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGG GG G GG GTGG/T
rs48485333
MPD | dbSNP | MGI SNP Detail
Chr16:26478943fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCC CCAC CC C CA/C
rs50930274
MPD | dbSNP | MGI SNP Detail
Chr16:26479006fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAGAAGA AA AAAA/G
rs47786748
MPD | dbSNP | MGI SNP Detail
Chr16:26479016fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAAAAGA AA GGAA/G
rs48692043
MPD | dbSNP | MGI SNP Detail
Chr16:26479833fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTCTT T TT T TC/T
rs47507463
MPD | dbSNP | MGI SNP Detail
Chr16:26479889fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGG GGTG GG GGGG/T
rs48648449
MPD | dbSNP | MGI SNP Detail
Chr16:26479966fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAA AA A AA GAAA/G
rs47934971
MPD | dbSNP | MGI SNP Detail
Chr16:26480327fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAAAAAA AA GAAA/G
rs51500120
MPD | dbSNP | MGI SNP Detail
Chr16:26480441fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGGGGGG GG AGGA/G
rs50983260
MPD | dbSNP | MGI SNP Detail
Chr16:26480468fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGGGGGG GG TGGG/T
rs50583323
MPD | dbSNP | MGI SNP Detail
Chr16:26480493fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTGTTGT TT TGTG/T
rs47213352
MPD | dbSNP | MGI SNP Detail
Chr16:26480646fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAGAAGA AA AGAA/G
rs49898212
MPD | dbSNP | MGI SNP Detail
Chr16:26480675fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGTGGTG GG TTGG/T
rs46710536
MPD | dbSNP | MGI SNP Detail
Chr16:26480695fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCTCCTC CC TTCC/T
rs48261061
MPD | dbSNP | MGI SNP Detail
Chr16:26480717fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAA AACA AA ACAA/C
rs51288587
MPD | dbSNP | MGI SNP Detail
Chr16:26480909fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCCCCCC CC TCCC/T
rs49357138
MPD | dbSNP | MGI SNP Detail
Chr16:26480960fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAGAAGA AA GGAA/G
rs50024018
MPD | dbSNP | MGI SNP Detail
Chr16:26481052fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAACAACA AA CCAA/C
rs50865598
MPD | dbSNP | MGI SNP Detail
Chr16:26481109fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGG GGAG GG AAGA/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs50975158
MPD | dbSNP | MGI SNP Detail
Chr16:26481173fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAACAACA AA CCAA/C
rs49074713
MPD | dbSNP | MGI SNP Detail
Chr16:26481242fCldn16 : Coding-Synonymous
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCTCCTC CC CTCC/T
rs48606778
MPD | dbSNP | MGI SNP Detail
Chr16:26481348fCldn16 : Coding-NonSynonymous
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGTGGTG GG TTGG/T
rs49227068
MPD | dbSNP | MGI SNP Detail
Chr16:26481456fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCTCCTC CC TTCC/T
rs51302671
MPD | dbSNP | MGI SNP Detail
Chr16:26481467fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAAAAAA AA GAAA/G
rs51006181
MPD | dbSNP | MGI SNP Detail
Chr16:26481527fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAGAAGA AA GGAA/G
rs51414006
MPD | dbSNP | MGI SNP Detail
Chr16:26481559fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGGGGAG GG AAGA/G
rs46014013
MPD | dbSNP | MGI SNP Detail
Chr16:26481636fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCC CCAC CC AACA/C
rs51392267
MPD | dbSNP | MGI SNP Detail
Chr16:26481785fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTCTT T TT C TC/T
rs46127326
MPD | dbSNP | MGI SNP Detail
Chr16:26482495fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCCCCAC CC CCCA/C
rs51389883
MPD | dbSNP | MGI SNP Detail
Chr16:26482511fCldn16 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCCCCCC CC TCCC/T
rs48004251
MPD | dbSNP | MGI SNP Detail
Chr16:26482525fCldn16 : Coding-Synonymous
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGGGGGG GG GAGA/G
rs45823457
MPD | dbSNP | MGI SNP Detail
Chr16:26482745fCldn16 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCCCCCC CC TCCC/T
rs47604393
MPD | dbSNP | MGI SNP Detail
Chr16:26482848fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTTTTTT TT CTTC/T
rs49502462
MPD | dbSNP | MGI SNP Detail
Chr16:26483013fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTT TTCT TT CCTC/T
rs45841297
MPD | dbSNP | MGI SNP Detail
Chr16:26483047fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAA AAGA AA GGAA/G
rs48296499
MPD | dbSNP | MGI SNP Detail
Chr16:26483182fCldn16 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPAAAAAAAAAA AA AGAA/G
rs45963824
MPD | dbSNP | MGI SNP Detail
Chr16:26483312fCldn16 : 547 bp downstream of
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPTTTTTTTTTT TT CTTC/T
rs49942018
MPD | dbSNP | MGI SNP Detail
Chr16:26483750fCldn16 : 985 bp downstream of
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPGGGGGTGGTG GG TTGG/T
rs48119499
MPD | dbSNP | MGI SNP Detail
Chr16:26483803fCldn16 : 1038 bp downstream of
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCC CCTC CC CCCC/T
rs50252120
MPD | dbSNP | MGI SNP Detail
Chr16:26483930fCldn16 : 1165 bp downstream of
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPCCCCCTCCTC CC CTCC/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/02/2016
MGI 6.02
The Jackson Laboratory