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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Pomt1 protein-O-mannosyltransferase 1 MGI:2138994 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs28236444 MPD | dbSNP | MGI SNP Detail | Chr2:32090328 | f | Pomt1 : Locus-Region Prrc2b : Locus-Region | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | T | G/T | ||
| rs28236443 MPD | dbSNP | MGI SNP Detail | Chr2:32091032 | f | Pomt1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||
| rs28236442 MPD | dbSNP | MGI SNP Detail | Chr2:32091059 | f | Pomt1 : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs28236441 MPD | dbSNP | MGI SNP Detail | Chr2:32091115 | f | Pomt1 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | ||
| rs28236440 MPD | dbSNP | MGI SNP Detail | Chr2:32091156 | f | Pomt1 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | ||
| rs28236439 MPD | dbSNP | MGI SNP Detail | Chr2:32091189 | f | Pomt1 : Locus-Region | 1 | SNP | T | T | T | T | C | T | C | C/T | ||||||||||
| rs28236438 MPD | dbSNP | MGI SNP Detail | Chr2:32091839 | f | Pomt1 : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A/G | |||
| rs28236437 MPD | dbSNP | MGI SNP Detail | Chr2:32091890 | f | Pomt1 : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C/T | |||
| rs28236436 MPD | dbSNP | MGI SNP Detail | Chr2:32091901 | f | Pomt1 : Locus-Region | 1 | SNP | T | T | T | T | T | G | T | T | G | T | T | T | T | G | G/T | |||
| rs28236435 MPD | dbSNP | MGI SNP Detail | Chr2:32092098 | f | Pomt1 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||||
| rs28236434 MPD | dbSNP | MGI SNP Detail | Chr2:32092367 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A/G | |||
| rs28236433 MPD | dbSNP | MGI SNP Detail | Chr2:32092673 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | G | A/G | ||||
| rs28236432 MPD | dbSNP | MGI SNP Detail | Chr2:32092946 | f | Pomt1 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A/G | |||
| rs28236431 MPD | dbSNP | MGI SNP Detail | Chr2:32093863 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | G | T | T | T | T | G | G/T | |||
| rs28236430 MPD | dbSNP | MGI SNP Detail | Chr2:32095409 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | G | A/G | ||||
| rs28236429 MPD | dbSNP | MGI SNP Detail | Chr2:32096324 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C/T | |||
| rs28236428 MPD | dbSNP | MGI SNP Detail | Chr2:32096334 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | A/G | |||
| rs28236427 MPD | dbSNP | MGI SNP Detail | Chr2:32096632 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A/G | |||
| rs28236426 MPD | dbSNP | MGI SNP Detail | Chr2:32096762 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | C/T | |||
| rs28236425 MPD | dbSNP | MGI SNP Detail | Chr2:32097282 | f | Pomt1 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | |||
| rs28236424 MPD | dbSNP | MGI SNP Detail | Chr2:32097316 | f | Pomt1 : Coding-NonSynonymous | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A/G | |||
| rs28236423 MPD | dbSNP | MGI SNP Detail | Chr2:32097426 | f | Pomt1 : Intron | 1 | SNP | A | A | A | G | A | A | A | A | G | A/G | ||||||||
| rs28236422 MPD | dbSNP | MGI SNP Detail | Chr2:32097598 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A/G | |||
| rs28236421 MPD | dbSNP | MGI SNP Detail | Chr2:32098352 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | G | A | G | A | A | A | A | G | A/G | ||||
| rs28236420 MPD | dbSNP | MGI SNP Detail | Chr2:32098483 | f | Pomt1 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs28236419 MPD | dbSNP | MGI SNP Detail | Chr2:32098858 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | T | A | A | T | A | A | A | A | T | A/T | ||||
| rs28236418 MPD | dbSNP | MGI SNP Detail | Chr2:32099079 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A/G | |||
| rs28236417 MPD | dbSNP | MGI SNP Detail | Chr2:32099172 | f | Pomt1 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C/T | |||
| rs28236416 MPD | dbSNP | MGI SNP Detail | Chr2:32099802 | f | Pomt1 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | A/G | |||
| rs28236415 MPD | dbSNP | MGI SNP Detail | Chr2:32099965 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | A/G | |||
| rs28236414 MPD | dbSNP | MGI SNP Detail | Chr2:32100348 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C/T | |||
| rs28236413 MPD | dbSNP | MGI SNP Detail | Chr2:32101335 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||
| rs28236412 MPD | dbSNP | MGI SNP Detail | Chr2:32101440 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs28236411 MPD | dbSNP | MGI SNP Detail | Chr2:32101451 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | C | C/T | ||||
| rs28236410 MPD | dbSNP | MGI SNP Detail | Chr2:32101649 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs28236409 MPD | dbSNP | MGI SNP Detail | Chr2:32101714 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||
| rs28236408 MPD | dbSNP | MGI SNP Detail | Chr2:32101802 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||
| rs28236407 MPD | dbSNP | MGI SNP Detail | Chr2:32101811 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||
| rs28236406 MPD | dbSNP | MGI SNP Detail | Chr2:32101862 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | ||
| rs28236405 MPD | dbSNP | MGI SNP Detail | Chr2:32102238 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||
| rs28236404 MPD | dbSNP | MGI SNP Detail | Chr2:32102348 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||
| rs28236403 MPD | dbSNP | MGI SNP Detail | Chr2:32102481 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||
| rs28236402 MPD | dbSNP | MGI SNP Detail | Chr2:32102493 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C | A/C | ||
| rs28236401 MPD | dbSNP | MGI SNP Detail | Chr2:32102528 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||
| rs28236400 MPD | dbSNP | MGI SNP Detail | Chr2:32102979 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | G | C | C | C | C | G | G | C/G | ||
| rs28236399 MPD | dbSNP | MGI SNP Detail | Chr2:32103305 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | A/G | |||||
| rs28236398 MPD | dbSNP | MGI SNP Detail | Chr2:32103685 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | |||
| rs28236397 MPD | dbSNP | MGI SNP Detail | Chr2:32104448 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A/G | |||
| rs28236396 MPD | dbSNP | MGI SNP Detail | Chr2:32105020 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | |||
| rs28236395 MPD | dbSNP | MGI SNP Detail | Chr2:32105321 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | C | T | T | C | T | T | T | T | C | C | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs28236394 MPD | dbSNP | MGI SNP Detail | Chr2:32105350 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | A | A/G | ||||
| rs28236393 MPD | dbSNP | MGI SNP Detail | Chr2:32105505 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G/T | |||
| rs28236392 MPD | dbSNP | MGI SNP Detail | Chr2:32105649 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | G | A | A | G | A | A | A | A | G | G | A/G | |||
| rs6386933 MPD | dbSNP | MGI SNP Detail | Chr2:32106454 | f | Pomt1 : Intron | 2 | SNP | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | |
| rs6388043 MPD | dbSNP | MGI SNP Detail | Chr2:32106696 | f | Pomt1 : Intron | 2 | SNP | G | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | |
| rs6389028 MPD | dbSNP | MGI SNP Detail | Chr2:32106870 | f | Pomt1 : Coding-Synonymous | 2 | SNP | A | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |
| rs6389060 MPD | dbSNP | MGI SNP Detail | Chr2:32106898 | f | Pomt1 : Intron | 1 | SNP | G | A | A/G | |||||||||||||||
| rs28236391 MPD | dbSNP | MGI SNP Detail | Chr2:32106953 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | G | C/G | ||||
| rs28236390 MPD | dbSNP | MGI SNP Detail | Chr2:32106955 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | T | G | G | G | G | T | G | G/T | |||
| rs28236389 MPD | dbSNP | MGI SNP Detail | Chr2:32107034 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs28236388 MPD | dbSNP | MGI SNP Detail | Chr2:32107074 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | A | A/C | ||||
| rs28236387 MPD | dbSNP | MGI SNP Detail | Chr2:32107117 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | |||
| rs28236386 MPD | dbSNP | MGI SNP Detail | Chr2:32107126 | f | Pomt1 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs28236385 MPD | dbSNP | MGI SNP Detail | Chr2:32107153 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs28236384 MPD | dbSNP | MGI SNP Detail | Chr2:32107349 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs28236383 MPD | dbSNP | MGI SNP Detail | Chr2:32107703 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | |||
| rs28236382 MPD | dbSNP | MGI SNP Detail | Chr2:32107783 | f | Pomt1 : Intron | 1 | SNP | T | T | T | T | C | T | T | C | T | T | T | T | C | C | C/T | |||
| rs28236381 MPD | dbSNP | MGI SNP Detail | Chr2:32108026 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | ||||
| rs28236380 MPD | dbSNP | MGI SNP Detail | Chr2:32108122 | f | Pomt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs28236379 MPD | dbSNP | MGI SNP Detail | Chr2:32108311 | f | Pomt1 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | |||
| rs28236378 MPD | dbSNP | MGI SNP Detail | Chr2:32108697 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | |||
| rs28236377 MPD | dbSNP | MGI SNP Detail | Chr2:32109016 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| rs28236376 MPD | dbSNP | MGI SNP Detail | Chr2:32109432 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||
| rs28236375 MPD | dbSNP | MGI SNP Detail | Chr2:32109472 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||
| rs28236374 MPD | dbSNP | MGI SNP Detail | Chr2:32109527 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs28236373 MPD | dbSNP | MGI SNP Detail | Chr2:32109551 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | |||
| rs28236372 MPD | dbSNP | MGI SNP Detail | Chr2:32109602 | f | Pomt1 : Intron Uck1 : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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