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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Tsen54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) MGI:1923515 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs27015858 MPD | dbSNP | MGI SNP Detail | Chr11:115674212 | f | Caskin2 : Intron Tsen54 : Locus-Region | 2 | SNP | A | A | G | G | G | G | G | G | A | G | A/G | |||||
| rs27015857 MPD | dbSNP | MGI SNP Detail | Chr11:115674257 | f | Caskin2 : Intron Tsen54 : Locus-Region | 2 | SNP | C | C | C | G | G | G | G | G | G | C | C | G | C/G | |||
| rs27015856 MPD | dbSNP | MGI SNP Detail | Chr11:115674301 | f | Caskin2 : Intron Tsen54 : Locus-Region | 1 | SNP | A | A | A | A | A | T | A | A | A | T | A/T | |||||
| rs27015855 MPD | dbSNP | MGI SNP Detail | Chr11:115674307 | f | Caskin2 : Intron Tsen54 : Locus-Region | 2 | SNP | G | G | A | G | G | G | G | A | G | G | G | G | G | A/G | ||
| rs29384226 MPD | dbSNP | MGI SNP Detail | Chr11:115674348 | f | Caskin2 : Intron Tsen54 : Locus-Region | 1 | SNP | G | G | C | C | C/G | |||||||||||
| rs29385266 MPD | dbSNP | MGI SNP Detail | Chr11:115674353 | f | Caskin2 : Intron Tsen54 : Locus-Region | 1 | SNP | C | C | T | T | C/T | |||||||||||
| rs27015854 MPD | dbSNP | MGI SNP Detail | Chr11:115674675 | f | Caskin2 : Intron Tsen54 : Locus-Region | 2 | SNP | A | A | A | C | C | A | C | C | A | A | C | A | A | A | A/C | |
| rs27015853 MPD | dbSNP | MGI SNP Detail | Chr11:115674744 | f | Caskin2 : Intron Tsen54 : Locus-Region | 2 | SNP | A | A | A | G | G | A | G | G | A | A | A | G | A | A | A | A/G |
| rs29438159 MPD | dbSNP | MGI SNP Detail | Chr11:115674915 | f | Caskin2 : Locus-Region Tsen54 : Locus-Region | 1 | SNP | G | C | C | C | C/G | |||||||||||
| rs29441098 MPD | dbSNP | MGI SNP Detail | Chr11:115674998 | f | Caskin2 : Locus-Region Tsen54 : Locus-Region | 1 | SNP | T | T | C | C | C/T | |||||||||||
| rs29480450 MPD | dbSNP | MGI SNP Detail | Chr11:115675010 | f | Caskin2 : Locus-Region Tsen54 : Locus-Region | 1 | SNP | G | G | T | T | G/T | |||||||||||
| rs29464134 MPD | dbSNP | MGI SNP Detail | Chr11:115675046 | f | Caskin2 : Locus-Region Tsen54 : Locus-Region | 1 | SNP | T | T | C | C | C/T | |||||||||||
| rs29388110 MPD | dbSNP | MGI SNP Detail | Chr11:115675228 | f | Caskin2 : Locus-Region Tsen54 : Locus-Region | 1 | SNP | A | A | G | G | A/G | |||||||||||
| rs27015852 MPD | dbSNP | MGI SNP Detail | Chr11:115675455 | f | Tsen54 : Locus-Region | 1 | SNP | A | C | C | C | C | A | A | A/C | ||||||||
| rs27015851 MPD | dbSNP | MGI SNP Detail | Chr11:115675522 | f | Tsen54 : Locus-Region | 1 | SNP | T | C | C | C | C | T | T | T | C/T | |||||||
| rs27015850 MPD | dbSNP | MGI SNP Detail | Chr11:115675904 | f | Tsen54 : Locus-Region | 2 | SNP | A | A | A | G | G | G | G | G | A | A | A/G | |||||
| rs27015849 MPD | dbSNP | MGI SNP Detail | Chr11:115675918 | f | Tsen54 : Locus-Region | 2 | SNP | A | A | A | C | C | C | C | C | A | A | A/C | |||||
| rs29401797 MPD | dbSNP | MGI SNP Detail | Chr11:115675942 | f | Tsen54 : Locus-Region | 1 | SNP | A | A | G | A/G | ||||||||||||
| rs27015848 MPD | dbSNP | MGI SNP Detail | Chr11:115675971 | f | Tsen54 : Locus-Region | 2 | SNP | C | C | C | T | T | T | T | C | C | T | C | C | C | C/T | ||
| rs27015847 MPD | dbSNP | MGI SNP Detail | Chr11:115675985 | f | Tsen54 : Locus-Region | 1 | SNP | G | C | C | C | G | G | G | C | G | G | G | C/G | ||||
| rs27015846 MPD | dbSNP | MGI SNP Detail | Chr11:115676837 | f | Tsen54 : Intron | 2 | SNP | C | C | C | T | T | T | T | C | C | T | C | C | C | C/T | ||
| rs27015845 MPD | dbSNP | MGI SNP Detail | Chr11:115677062 | f | Tsen54 : Coding-Synonymous | 2 | SNP | C | C | C | A | A | C | A | A | C | C | A | C | C | C | A/C | |
| rs27015844 MPD | dbSNP | MGI SNP Detail | Chr11:115677068 | f | Tsen54 : Coding-NonSynonymous | 1 | SNP | G | G | C | C | C | G | C | C/G | ||||||||
| rs29392980 MPD | dbSNP | MGI SNP Detail | Chr11:115677535 | f | Tsen54 : Intron | 1 | SNP | G | G | A | A | A/G | |||||||||||
| rs29449943 MPD | dbSNP | MGI SNP Detail | Chr11:115677836 | f | Tsen54 : Intron | 1 | SNP | A | A | G | A/G | ||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs29402939 MPD | dbSNP | MGI SNP Detail | Chr11:115677841 | f | Tsen54 : Intron | 1 | SNP | A | A | C | A/C | ||||||||||||
| rs29399965 MPD | dbSNP | MGI SNP Detail | Chr11:115678363 | f | Tsen54 : Intron | 1 | SNP | A | A | T | T | A/T | |||||||||||
| rs27015843 MPD | dbSNP | MGI SNP Detail | Chr11:115678610 | f | Tsen54 : Intron | 1 | SNP | G | G | G | G | G | G | C | G | G | G | G | G | C/G | |||
| rs27015842 MPD | dbSNP | MGI SNP Detail | Chr11:115678637 | f | Tsen54 : Intron | 1 | SNP | T | T | T | T | T | T | C | T | T | T | T | C/T | ||||
| rs29388932 MPD | dbSNP | MGI SNP Detail | Chr11:115679041 | f | Tsen54 : Intron | 1 | SNP | G | G | A | A | A/G | |||||||||||
| rs29461120 MPD | dbSNP | MGI SNP Detail | Chr11:115679273 | f | Tsen54 : Intron | 1 | SNP | G | G | C | C | C/G | |||||||||||
| rs29442463 MPD | dbSNP | MGI SNP Detail | Chr11:115679313 | f | Tsen54 : Intron | 1 | SNP | C | C | T | T | C/T | |||||||||||
| rs29486756 MPD | dbSNP | MGI SNP Detail | Chr11:115681371 | f | Tsen54 : Intron | 1 | SNP | C | T | C/T | |||||||||||||
| rs13466122 MPD | dbSNP | MGI SNP Detail | Chr11:115681802 | f | Tsen54 : Coding-NonSynonymous | 1 | SNP | C | T | T | C/T | ||||||||||||
| rs29421239 MPD | dbSNP | MGI SNP Detail | Chr11:115682774 | f | Tsen54 : Intron | 1 | SNP | C | C | T | C | C | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 06/05/2013 MGI 5.13 |
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