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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Atp13a2
ATPase type 13A2
MGI:1922022

116 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32841683
MPD | dbSNP | MGI SNP Detail
Chr4:140541100fAtp13a2 : Locus-Region1SNP CT     C          C/T
rs32185646
MPD | dbSNP | MGI SNP Detail
Chr4:140543551fAtp13a2 : Intron1SNP  C     T          C/T
rs32559945
MPD | dbSNP | MGI SNP Detail
Chr4:140544265fAtp13a2 : Intron1SNP TA     T          A/T
rs31751744
MPD | dbSNP | MGI SNP Detail
Chr4:140544993fAtp13a2 : Intron1SNP AA   A C          A/C
rs32235703
MPD | dbSNP | MGI SNP Detail
Chr4:140545024fAtp13a2 : Intron1SNP AC   C A          A/C
rs32889208
MPD | dbSNP | MGI SNP Detail
Chr4:140545288fAtp13a2 : Intron1SNP A    G A          A/G
rs32591108
MPD | dbSNP | MGI SNP Detail
Chr4:140545327fAtp13a2 : Intron1SNP G    A G          A/G
rs32501025
MPD | dbSNP | MGI SNP Detail
Chr4:140545903fAtp13a2 : Intron1SNP GA   A G          A/G
rs32903122
MPD | dbSNP | MGI SNP Detail
Chr4:140546140fAtp13a2 : Intron1SNP GG   G A          A/G
rs31913351
MPD | dbSNP | MGI SNP Detail
Chr4:140546167fAtp13a2 : Intron1SNP CT   T C          C/T
rs32917212
MPD | dbSNP | MGI SNP Detail
Chr4:140546210fAtp13a2 : Intron1SNP TC   C T          C/T
rs32029754
MPD | dbSNP | MGI SNP Detail
Chr4:140546216fAtp13a2 : Intron1SNP TC   C T          C/T
rs32385833
MPD | dbSNP | MGI SNP Detail
Chr4:140547004fAtp13a2 : Intron1SNP AG   G A          A/G
rs31878192
MPD | dbSNP | MGI SNP Detail
Chr4:140547135fAtp13a2 : Intron1SNP TA     T          A/T
rs28260921
MPD | dbSNP | MGI SNP Detail
Chr4:140547653fAtp13a2 : Intron2SNPA G   G A GA      GA/G
rs28260920
MPD | dbSNP | MGI SNP Detail
Chr4:140548534fAtp13a2 : Intron1SNP           C      TC/T
rs32596317
MPD | dbSNP | MGI SNP Detail
Chr4:140549344fAtp13a2 : Intron1SNPGG    A G          A/G
rs32471849
MPD | dbSNP | MGI SNP Detail
Chr4:140549541fAtp13a2 : Intron1SNPCC    T C          C/T
rs13461262
MPD | dbSNP | MGI SNP Detail
Chr4:140549756fAtp13a2 : Coding-NonSynonymous1SNP C    G C          C/G
rs32875038
MPD | dbSNP | MGI SNP Detail
Chr4:140549761fAtp13a2 : Coding-Synonymous1SNP C    T C          C/T
rs32628066
MPD | dbSNP | MGI SNP Detail
Chr4:140549805fAtp13a2 : Intron1SNP GT   T G          G/T
rs28260919
MPD | dbSNP | MGI SNP Detail
Chr4:140550627fAtp13a2 : Intron1SNPC CCCC CCCCC  CCCCTC/T
rs28260918
MPD | dbSNP | MGI SNP Detail
Chr4:140550784fAtp13a2 : Intron1SNPC CCCC TCCTC  CCCCCC/T
rs28260917
MPD | dbSNP | MGI SNP Detail
Chr4:140550906fAtp13a2 : Intron1SNPG GGGG AGGAG  GGGGGA/G
rs32707016
MPD | dbSNP | MGI SNP Detail
Chr4:140551143fAtp13a2 : Intron1SNPCCT   T C          C/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs28260916
MPD | dbSNP | MGI SNP Detail
Chr4:140551254fAtp13a2 : Coding-NonSynonymous2SNPAAGGGGGGAAGA  AAGAGA/G
rs28260915
MPD | dbSNP | MGI SNP Detail
Chr4:140551271fAtp13a2 : Coding-Synonymous1SNPC CCCC TCCTC  CCCCCC/T
rs28260914
MPD | dbSNP | MGI SNP Detail
Chr4:140551304fAtp13a2 : Coding-Synonymous1SNPA GGGG GAAGA  AAGAGA/G
rs28260913
MPD | dbSNP | MGI SNP Detail
Chr4:140551456fAtp13a2 : Intron1SNPG AAAA GGGGG  GGAGGA/G
rs28260912
MPD | dbSNP | MGI SNP Detail
Chr4:140551494fAtp13a2 : Coding-Synonymous1SNPT CCCC TTTTT  TTCTCC/T
rs28260911
MPD | dbSNP | MGI SNP Detail
Chr4:140551631fAtp13a2 : Intron1SNP  CCCC T  T     C CC/T
rs28260910
MPD | dbSNP | MGI SNP Detail
Chr4:140551764fAtp13a2 : Intron2SNPG AAAAAGGGGG  GGAGAA/G
rs28260909
MPD | dbSNP | MGI SNP Detail
Chr4:140551881fAtp13a2 : Intron2SNPT GGGGGGTTGT  TTGTGG/T
rs28260908
MPD | dbSNP | MGI SNP Detail
Chr4:140551944fAtp13a2 : Intron1SNPA GGGG GAAGA  AAGAGA/G
rs28260907
MPD | dbSNP | MGI SNP Detail
Chr4:140552414fAtp13a2 : Intron1SNPC CCCC  CC C  CCCCTC/T
rs28260906
MPD | dbSNP | MGI SNP Detail
Chr4:140552451fAtp13a2 : Coding-Synonymous1SNPC TTTT  CCCC  CCTCTC/T
rs28260905
MPD | dbSNP | MGI SNP Detail
Chr4:140552617fAtp13a2 : Coding-Synonymous1SNPC CTCC CCCCC  CCCCCC/T
rs28260904
MPD | dbSNP | MGI SNP Detail
Chr4:140552789fAtp13a2 : Intron1SNPA GGGG AAAAA  AAGAGA/G
rs28260903
MPD | dbSNP | MGI SNP Detail
Chr4:140552855fAtp13a2 : Intron1SNPA GGGG AAA    AAG GA/G
rs28260902
MPD | dbSNP | MGI SNP Detail
Chr4:140552921fAtp13a2 : Intron1SNPG CCCC CGGCG  GGCGCC/G
rs28260901
MPD | dbSNP | MGI SNP Detail
Chr4:140552999fAtp13a2 : Intron1SNPA GGGG GAAGA  AAGAGA/G
rs28260900
MPD | dbSNP | MGI SNP Detail
Chr4:140553051fAtp13a2 : Intron1SNPT CCCC CTTCT  TTCTCC/T
rs28260899
MPD | dbSNP | MGI SNP Detail
Chr4:140553282fAtp13a2 : Intron1SNPC  TTT CCCCC  CCTCTC/T
rs28260898
MPD | dbSNP | MGI SNP Detail
Chr4:140553360fAtp13a2 : Intron1SNPA GGGG GAAGA  AAGAGA/G
rs28260897
MPD | dbSNP | MGI SNP Detail
Chr4:140554788fAtp13a2 : Intron1SNPG AAAA GGGGG  GGAGAA/G
rs32230955
MPD | dbSNP | MGI SNP Detail
Chr4:140554809fAtp13a2 : Intron1SNP C    A C          A/C
rs33020239
MPD | dbSNP | MGI SNP Detail
Chr4:140555244fAtp13a2 : Intron1SNP GT   T G          G/T
rs28260896
MPD | dbSNP | MGI SNP Detail
Chr4:140555259fAtp13a2 : Intron1SNPG GGGG AGGAG  GGGGGA/G
rs28260895
MPD | dbSNP | MGI SNP Detail
Chr4:140555328fAtp13a2 : Intron1SNPC TTTT TCCTC  CCTCTC/T
rs31874374
MPD | dbSNP | MGI SNP Detail
Chr4:140555455fAtp13a2 : Intron1SNP GA     G          A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs28260894
MPD | dbSNP | MGI SNP Detail
Chr4:140556019fAtp13a2 : Intron2SNPG AAAAAAGGAG  GGAGGA/G
rs31832580
MPD | dbSNP | MGI SNP Detail
Chr4:140556033fAtp13a2 : Intron1SNPA G   G A          A/G
rs28260893
MPD | dbSNP | MGI SNP Detail
Chr4:140556107fAtp13a2 : Intron2SNPT CCCCC TT T   TC CC/T
rs28260892
MPD | dbSNP | MGI SNP Detail
Chr4:140556108fAtp13a2 : Intron1SNPG GGGG AGGAG  GGGGGA/G
rs28260891
MPD | dbSNP | MGI SNP Detail
Chr4:140556129fAtp13a2 : Intron2SNPA CCCCCCAACA  AACACA/C
rs28260890
MPD | dbSNP | MGI SNP Detail
Chr4:140556298fAtp13a2 : Coding-Synonymous2SNPA GGGG GAAGA  AAGAGA/G
rs28260889
MPD | dbSNP | MGI SNP Detail
Chr4:140556362fAtp13a2 : Coding-NonSynonymous1SNPG GGGG GGGGG  GGGGAA/G
rs32594356
MPD | dbSNP | MGI SNP Detail
Chr4:140556385fAtp13a2 : Intron1SNPC T     C          C/T
rs32613131
MPD | dbSNP | MGI SNP Detail
Chr4:140556417fAtp13a2 : Intron1SNPA G     A          A/G
rs28260888
MPD | dbSNP | MGI SNP Detail
Chr4:140556484fAtp13a2 : Coding-NonSynonymous1SNPG AAAA GG GG  GGA GA/G
rs28260887
MPD | dbSNP | MGI SNP Detail
Chr4:140556518fAtp13a2 : Intron1SNP  TTTT TGGTG   GTGTG/T
rs28260886
MPD | dbSNP | MGI SNP Detail
Chr4:140556680fAtp13a2 : Coding-Synonymous1SNPG CCCC CGGCG  GGCGCC/G
rs28260885
MPD | dbSNP | MGI SNP Detail
Chr4:140556714fAtp13a2 : Coding-NonSynonymous1SNPG AAAA AGGAG  GGAGAA/G
rs28260884
MPD | dbSNP | MGI SNP Detail
Chr4:140556852fAtp13a2 : Intron1SNPC AAAA CCCCC  CCACCA/C
rs28260883
MPD | dbSNP | MGI SNP Detail
Chr4:140557412fAtp13a2 : Intron1SNPA AAAA GAAGA  AAAAGA/G
rs28260882
MPD | dbSNP | MGI SNP Detail
Chr4:140557442fAtp13a2 : Intron1SNPG GGGG GGGGG  GGGGTG/T
rs28260881
MPD | dbSNP | MGI SNP Detail
Chr4:140557813fAtp13a2 : Coding-Synonymous1SNPA GGGG AAAAA  AAGAGA/G
rs13461261
MPD | dbSNP | MGI SNP Detail
Chr4:140557840fAtp13a2 : Coding-Synonymous1SNP AG                A/G
rs28260880
MPD | dbSNP | MGI SNP Detail
Chr4:140558024fAtp13a2 : Intron2SNP CAAAAACC C   CCACAA/C
rs28260879
MPD | dbSNP | MGI SNP Detail
Chr4:140558030fAtp13a2 : Intron1SNPC CCCC A CA   CCCCCA/C
rs28260878
MPD | dbSNP | MGI SNP Detail
Chr4:140558043fAtp13a2 : Intron1SNPG  GGG GGGGA   AGGGA/G
rs28260877
MPD | dbSNP | MGI SNP Detail
Chr4:140558119fAtp13a2 : Intron1SNPG GGGG AGGAG  GGGGGA/G
rs32601055
MPD | dbSNP | MGI SNP Detail
Chr4:140558187fAtp13a2 : Intron1SNP GT   T            G/T
rs28260876
MPD | dbSNP | MGI SNP Detail
Chr4:140558283fAtp13a2 : Intron2SNPTTCCCCCCTTCT  TTCTCC/T
rs32831961
MPD | dbSNP | MGI SNP Detail
Chr4:140558487fAtp13a2 : Intron1SNP  T   T G          G/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs33009497
MPD | dbSNP | MGI SNP Detail
Chr4:140558535fAtp13a2 : Intron1SNP  G   G A          A/G
rs32366617
MPD | dbSNP | MGI SNP Detail
Chr4:140558728fAtp13a2 : Intron1SNP  G   G T          G/T
rs28260875
MPD | dbSNP | MGI SNP Detail
Chr4:140558913fAtp13a2 : Coding-NonSynonymous1SNPA CCCC AAAAA   ACACA/C
rs28260874
MPD | dbSNP | MGI SNP Detail
Chr4:140559029fAtp13a2 : Intron1SNPC CCCC CCCCC  CCCCGC/G
rs28260873
MPD | dbSNP | MGI SNP Detail
Chr4:140559069fAtp13a2 : Coding-Synonymous1SNP  TTTT         CT CC/T
rs28260872
MPD | dbSNP | MGI SNP Detail
Chr4:140559380fAtp13a2 : Intron2SNPGGTTTT  GGGG  GGTGGG/T
rs28260871
MPD | dbSNP | MGI SNP Detail
Chr4:140559787fAtp13a2 : Intron1SNPC TTTT CCCCC  CCTCTC/T
rs28260870
MPD | dbSNP | MGI SNP Detail
Chr4:140559916fAtp13a2 : Coding-Synonymous1SNP  CCCC  T  T   TCTCC/T
rs28260869
MPD | dbSNP | MGI SNP Detail
Chr4:140559952fAtp13a2 : Coding-Synonymous1SNPT CCCC CTTCT  TTCTCC/T
rs28260868
MPD | dbSNP | MGI SNP Detail
Chr4:140559969fAtp13a2 : Intron1SNPG AAAA  GGGG  GGAGAA/G
rs28260867
MPD | dbSNP | MGI SNP Detail
Chr4:140560312fAtp13a2 : Coding-Synonymous1SNPC AAAA ACCAC  CCACCA/C
rs28260866
MPD | dbSNP | MGI SNP Detail
Chr4:140560424fAtp13a2 : Intron1SNPC AAAA CCCCC  CCACCA/C
rs31870436
MPD | dbSNP | MGI SNP Detail
Chr4:140560498fAtp13a2 : Intron1SNP CT   T            C/T
rs28260865
MPD | dbSNP | MGI SNP Detail
Chr4:140560821fAtp13a2 : Intron2SNPCCTTTT TCCTC  CCTCTC/T
rs28260864
MPD | dbSNP | MGI SNP Detail
Chr4:140561016fAtp13a2 : Coding-Synonymous1SNPC CCCC TCCTC  CCCCTC/T
rs28260863
MPD | dbSNP | MGI SNP Detail
Chr4:140561158fAtp13a2 : Intron1SNPG GGGG  GG G  GGGGAA/G
rs28260862
MPD | dbSNP | MGI SNP Detail
Chr4:140561196fAtp13a2 : Coding-Synonymous1SNPC CCCC  CC C  CCCCTC/T
rs28260861
MPD | dbSNP | MGI SNP Detail
Chr4:140561202fAtp13a2 : Coding-Synonymous1SNPT TTTT CTTCT  TTTT C/T
rs28260860
MPD | dbSNP | MGI SNP Detail
Chr4:140561277fAtp13a2 : Coding-Synonymous1SNPA AAAA GAAGA  AAAAGA/G
rs28260859
MPD | dbSNP | MGI SNP Detail
Chr4:140561425fAtp13a2 : Intron1SNPG GGGG AGGAG  GGGGAA/G
rs28260858
MPD | dbSNP | MGI SNP Detail
Chr4:140561740fAtp13a2 : Intron1SNPG GGGG TGGTG  GGG GG/T
rs28260857
MPD | dbSNP | MGI SNP Detail
Chr4:140561741fAtp13a2 : Intron1SNPC TTTT  CC C  CCTCCC/T
rs28260856
MPD | dbSNP | MGI SNP Detail
Chr4:140561747fAtp13a2 : Intron1SNP  GGGG  T T    TGTGG/T
rs28260855
MPD | dbSNP | MGI SNP Detail
Chr4:140561840fAtp13a2 : Intron1SNP  AAAA G  G     A AA/G
rs28260854
MPD | dbSNP | MGI SNP Detail
Chr4:140561996fAtp13a2 : Coding-Synonymous1SNPT TTTT CTTCT  TTTTCC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs28260853
MPD | dbSNP | MGI SNP Detail
Chr4:140562041fAtp13a2 : Coding-Synonymous1SNPA AAAA GAAGA  AAAAGA/G
rs28260852
MPD | dbSNP | MGI SNP Detail
Chr4:140562074fAtp13a2 : Coding-Synonymous1SNPA GG G GAAGA  AAGAGA/G
rs28260851
MPD | dbSNP | MGI SNP Detail
Chr4:140562297fAtp13a2 : Coding-Synonymous1SNPT TTTT ATTAT  TTTTAA/T
rs28260850
MPD | dbSNP | MGI SNP Detail
Chr4:140562364fAtp13a2 : Coding-Synonymous1SNPC CCCC TCCTC  CCCCCC/T
rs28260849
MPD | dbSNP | MGI SNP Detail
Chr4:140562405fAtp13a2 : Coding-Synonymous1SNPA AAAA GAAGA  AAAAGA/G
rs28260848
MPD | dbSNP | MGI SNP Detail
Chr4:140562489fAtp13a2 : Intron1SNPG GGGG AGGAG  GGGGAA/G
rs28260847
MPD | dbSNP | MGI SNP Detail
Chr4:140562564fAtp13a2 : Intron1SNP  GGGG GAAGA  AAGAGA/G
rs28260846
MPD | dbSNP | MGI SNP Detail
Chr4:140562710fAtp13a2 : Coding-Synonymous1SNPC CCCC TCCTC  CCCCTC/T
rs28260845
MPD | dbSNP | MGI SNP Detail
Chr4:140562722fAtp13a2 : Coding-NonSynonymous1SNPG GGGG GGGGG  GGGGAA/G
rs4232382
MPD | dbSNP | MGI SNP Detail
Chr4:140562975rAtp13a2 : Coding-Synonymous2SNP  G GGGGG   AG     A/G
rs4232381
MPD | dbSNP | MGI SNP Detail
Chr4:140562984rAtp13a2 : Coding-Synonymous1SNP  G GGGGG   AG     A/G
rs4232380
MPD | dbSNP | MGI SNP Detail
Chr4:140563131rAtp13a2 : mRNA-UTR2SNPA AAAAACAACACAAAAACA/C
rs31974384
MPD | dbSNP | MGI SNP Detail
Chr4:140563298fAtp13a2 : Locus-Region1SNP      T C          C/T
rs32130974
MPD | dbSNP | MGI SNP Detail
Chr4:140563323fAtp13a2 : Locus-Region1SNP      T C          C/T
rs32959746
MPD | dbSNP | MGI SNP Detail
Chr4:140563466fAtp13a2 : Locus-Region1SNP      T C          C/T
rs32674573
MPD | dbSNP | MGI SNP Detail
Chr4:140563545fAtp13a2 : Locus-Region1SNP      A G          A/G

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/08/2013
MGI 5.13
The Jackson Laboratory