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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Gatm
glycine amidinotransferase (L-arginine:glycine amidinotransferase)
MGI:1914342

109 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27422783
MPD | dbSNP | MGI SNP Detail
Chr2:122418379fGatm : Locus-Region1SNPC C CC CCCTC  TCCCC/T
rs27422782
MPD | dbSNP | MGI SNP Detail
Chr2:122418555fGatm : Locus-Region1SNPC CCCC CCCC  CCCTCC/T
rs27422781
MPD | dbSNP | MGI SNP Detail
Chr2:122418631fGatm : Locus-Region1SNPC CCCC  CCT   TCTCC/T
rs27422780
MPD | dbSNP | MGI SNP Detail
Chr2:122418723fGatm : Locus-Region2SNPT TTTTC TTCT  CTCTC/T
rs27422779
MPD | dbSNP | MGI SNP Detail
Chr2:122419001fGatm : Locus-Region1SNPT TTTT CTTCT TCTCTC/T
rs27422778
MPD | dbSNP | MGI SNP Detail
Chr2:122419045fGatm : Locus-Region1SNPT TTTT TTTCT TCTCTC/T
rs27422777
MPD | dbSNP | MGI SNP Detail
Chr2:122419168fGatm : Locus-Region2SNPGGGGGGAGGGAG GAGAGA/G
rs27422776
MPD | dbSNP | MGI SNP Detail
Chr2:122419189fGatm : Locus-Region1SNPC CCCC ACCAC AACACA/C
rs27422775
MPD | dbSNP | MGI SNP Detail
Chr2:122419266fGatm : Locus-Region1SNPT TTTT TTTCT  CTCTC/T
rs27422774
MPD | dbSNP | MGI SNP Detail
Chr2:122419504fGatm : Locus-Region2SNPGGGGGGAAG AG  AGAGA/G
rs33746467
MPD | dbSNP | MGI SNP Detail
Chr2:122419526fGatm : Locus-Region1SNP AA   T A         A/T
rs29670630
MPD | dbSNP | MGI SNP Detail
Chr2:122419530fGatm : Locus-Region1SNP CC   A C         A/C
rs29516029
MPD | dbSNP | MGI SNP Detail
Chr2:122420084fGatm : Locus-Region1SNP AA   G A         A/G
rs4223435
MPD | dbSNP | MGI SNP Detail
Chr2:122420308rGatm : mRNA-UTR1SNP  G GGGTG   G     G/T
rs33245637
MPD | dbSNP | MGI SNP Detail
Chr2:122420466fGatm : mRNA-UTR1SNP GG   A G         A/G
rs13475521
MPD | dbSNP | MGI SNP Detail
Chr2:122420813rGatm : mRNA-UTR2SNPT TTTTATTTA   ATATA/T
rs29770349
MPD | dbSNP | MGI SNP Detail
Chr2:122420874fGatm : mRNA-UTR1SNPA A   G A         A/G
rs27422773
MPD | dbSNP | MGI SNP Detail
Chr2:122421068fGatm : mRNA-UTR2SNPA A AATTAATA   ATAA/T
rs27422772
MPD | dbSNP | MGI SNP Detail
Chr2:122421296fGatm : Coding-Synonymous2SNPAAAAAATTAATA  TATAA/T
rs27422771
MPD | dbSNP | MGI SNP Detail
Chr2:122421478fGatm : Intron2SNPAAAAAAGGAAGA AGAGAA/G
rs27422770
MPD | dbSNP | MGI SNP Detail
Chr2:122421589fGatm : Intron2SNPAAA AAGGAAGA AGAGAA/G
rs27422769
MPD | dbSNP | MGI SNP Detail
Chr2:122421616fGatm : Intron2SNPCCCCCCTTCCTC CTCTCC/T
rs32901235
MPD | dbSNP | MGI SNP Detail
Chr2:122421625fGatm : Intron1SNPGGG   A G         A/G
rs33335184
MPD | dbSNP | MGI SNP Detail
Chr2:122421709fGatm : Intron1SNPTT    C T         C/T
rs27422768
MPD | dbSNP | MGI SNP Detail
Chr2:122421920fGatm : Intron2SNPTTT TTCCTTCT TCTCTC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27422767
MPD | dbSNP | MGI SNP Detail
Chr2:122421955fGatm : Intron2SNPTTTTTTCTTTCT TCTCTC/T
rs27422766
MPD | dbSNP | MGI SNP Detail
Chr2:122421984fGatm : Intron2SNPGGGGGGAGGGAG GAGAGA/G
rs27422765
MPD | dbSNP | MGI SNP Detail
Chr2:122422076fGatm : Intron1SNPA AAAA TAAAA AAAAAA/T
rs27422764
MPD | dbSNP | MGI SNP Detail
Chr2:122422132fGatm : Intron2SNPGGGGGGAGGGAG GAG GA/G
rs33758853
MPD | dbSNP | MGI SNP Detail
Chr2:122422218fGatm : Intron1SNPCCC   T C         C/T
rs27422763
MPD | dbSNP | MGI SNP Detail
Chr2:122422282fGatm : Intron2SNPTTT TTAATTAT TATATA/T
rs27422762
MPD | dbSNP | MGI SNP Detail
Chr2:122422337fGatm : Intron1SNPA AAAA GAAAA AAAAAA/G
rs33685629
MPD | dbSNP | MGI SNP Detail
Chr2:122422490fGatm : Intron1SNPTTT   C T         C/T
rs27422761
MPD | dbSNP | MGI SNP Detail
Chr2:122422580fGatm : Intron1SNPG GGGG CGGGG GGGGGC/G
rs27422760
MPD | dbSNP | MGI SNP Detail
Chr2:122422734fGatm : Intron1SNPC CCCC GCCCC CCCCCC/G
rs33430657
MPD | dbSNP | MGI SNP Detail
Chr2:122422758fGatm : Intron1SNPTTT   A           A/T
rs33209671
MPD | dbSNP | MGI SNP Detail
Chr2:122422767fGatm : Intron1SNPAAA   G           A/G
rs27422759
MPD | dbSNP | MGI SNP Detail
Chr2:122422909fGatm : Intron2SNPC C CCTCC TC CTCTCC/T
rs27422758
MPD | dbSNP | MGI SNP Detail
Chr2:122422920fGatm : Intron1SNPG G  G AG A  GAGAGA/G
rs29769359
MPD | dbSNP | MGI SNP Detail
Chr2:122422977fGatm : Intron1SNPT T   C           C/T
rs27422757
MPD | dbSNP | MGI SNP Detail
Chr2:122423315fGatm : Intron2SNPC CCCCGCCCGC CGCGCC/G
rs27422756
MPD | dbSNP | MGI SNP Detail
Chr2:122423346fGatm : Intron2SNPC C CCTTCCTC CTCTCC/T
rs3704156
MPD | dbSNP | MGI SNP Detail
Chr2:122423793fGatm : Intron3SNPGGGGGGAAGGAG GAGAGA/G
rs27422755
MPD | dbSNP | MGI SNP Detail
Chr2:122424144fGatm : Intron1SNPC C CC CCCTC CTCTCC/T
rs27422754
MPD | dbSNP | MGI SNP Detail
Chr2:122426110fGatm : Intron2SNPAAA AACCAACA ACACAA/C
rs33186328
MPD | dbSNP | MGI SNP Detail
Chr2:122426124fGatm : Coding-Synonymous1SNP AA   G           A/G
rs33513385
MPD | dbSNP | MGI SNP Detail
Chr2:122426283fGatm : Intron1SNP GG   A G         A/G
rs32982388
MPD | dbSNP | MGI SNP Detail
Chr2:122426313fGatm : Intron1SNP AA   T A         A/T
rs3690655
MPD | dbSNP | MGI SNP Detail
Chr2:122426677fGatm : Intron2SNPT TTTTGGTTGT TGTGTG/T
rs3691392
MPD | dbSNP | MGI SNP Detail
Chr2:122426865fGatm : Intron2SNPTTT   C T         C/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs3692034
MPD | dbSNP | MGI SNP Detail
Chr2:122426957fGatm : Intron2SNPTTT   G T         G/T
rs3706367
MPD | dbSNP | MGI SNP Detail
Chr2:122427047fGatm : Intron2SNPAAA   G           A/G
rs3706407
MPD | dbSNP | MGI SNP Detail
Chr2:122427066fGatm : Intron2SNPAAA   G           A/G
rs29672021
MPD | dbSNP | MGI SNP Detail
Chr2:122427135fGatm : Intron1SNPGGG   A           A/G
rs29517359
MPD | dbSNP | MGI SNP Detail
Chr2:122427615fGatm : Intron1SNP AA   G           A/G
rs27422753
MPD | dbSNP | MGI SNP Detail
Chr2:122427732fGatm : Intron2SNPGGG GGCCG C  GCGCGC/G
rs27422752
MPD | dbSNP | MGI SNP Detail
Chr2:122427797fGatm : Intron2SNPGGGGGGA GGA  GAGAGA/G
rs29869289
MPD | dbSNP | MGI SNP Detail
Chr2:122427801fGatm : Intron1SNP AA   G           A/G
rs27422751
MPD | dbSNP | MGI SNP Detail
Chr2:122427942fGatm : Intron2SNPTTTTTTCCTTCT TCTCTC/T
rs3676525
MPD | dbSNP | MGI SNP Detail
Chr2:122428185fGatm : Intron3SNPTTTTTTCTTTCT TCTCTC/T
rs3677234
MPD | dbSNP | MGI SNP Detail
Chr2:122428331fGatm : Coding-Synonymous3SNPTTTTTTCTTTCT TCTCTC/T
rs3678362
MPD | dbSNP | MGI SNP Detail
Chr2:122428485fGatm : Intron2SNPCCC   T           C/T
rs27422750
MPD | dbSNP | MGI SNP Detail
Chr2:122428728fGatm : Intron1SNPA   AA  A G  AGAG A/G
rs33292358
MPD | dbSNP | MGI SNP Detail
Chr2:122429028fGatm : Intron1SNP CC   T C         C/T
rs29499710
MPD | dbSNP | MGI SNP Detail
Chr2:122429037fGatm : Intron1SNP GG   A G         A/G
rs27422749
MPD | dbSNP | MGI SNP Detail
Chr2:122429130fGatm : Intron2SNPGGGGGGA GGAG GAGAGA/G
rs27422748
MPD | dbSNP | MGI SNP Detail
Chr2:122429279fGatm : Intron1SNPA AAAA CAAAA AAAAAA/C
rs27422747
MPD | dbSNP | MGI SNP Detail
Chr2:122429571fGatm : Intron1SNPG GGGG AGGGG GGGGGA/G
rs27422746
MPD | dbSNP | MGI SNP Detail
Chr2:122429603fGatm : Intron2SNPAAAAAAGAAAGA AGAGAA/G
rs27422745
MPD | dbSNP | MGI SNP Detail
Chr2:122430141fGatm : Intron2SNPC C CCGGCCGC CGCGCC/G
rs27422744
MPD | dbSNP | MGI SNP Detail
Chr2:122430223fGatm : Intron2SNPGGG   A G AG GAGA A/G
rs27422743
MPD | dbSNP | MGI SNP Detail
Chr2:122430399fGatm : Intron1SNPC CCCC TCCCC CCCCCC/T
rs27422742
MPD | dbSNP | MGI SNP Detail
Chr2:122430547fGatm : Intron1SNPA A A  GAAA  AAAAAA/G
rs27422741
MPD | dbSNP | MGI SNP Detail
Chr2:122430739fGatm : Intron1SNPA AAAA GAAAA AAAAAA/G
rs27422740
MPD | dbSNP | MGI SNP Detail
Chr2:122431171fGatm : Intron2SNPT T TTCTTTC  TCTCTC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27422739
MPD | dbSNP | MGI SNP Detail
Chr2:122431182fGatm : Intron2SNPT T TTC TTC  TCTCTC/T
rs27422738
MPD | dbSNP | MGI SNP Detail
Chr2:122431237fGatm : Intron1SNPG GGGG TGGGG GGGGGG/T
rs29501520
MPD | dbSNP | MGI SNP Detail
Chr2:122431429fGatm : Intron1SNP TT   C T         C/T
rs27422737
MPD | dbSNP | MGI SNP Detail
Chr2:122431585fGatm : Intron1SNPG    G CGGC  GC CGC/G
rs27422736
MPD | dbSNP | MGI SNP Detail
Chr2:122431674fGatm : Intron2SNPGGGGGGAGGGAG G GAGA/G
rs27422735
MPD | dbSNP | MGI SNP Detail
Chr2:122431697fGatm : Intron2SNPTTTTTTCTTTCT TCTCTC/T
rs27422734
MPD | dbSNP | MGI SNP Detail
Chr2:122432271fGatm : Intron2SNPTTT  TGT  G   G TTG/T
rs27422733
MPD | dbSNP | MGI SNP Detail
Chr2:122432419fGatm : Intron1SNPC CCCC TCCCC CCCCCC/T
rs27422732
MPD | dbSNP | MGI SNP Detail
Chr2:122432446fGatm : Intron1SNPC CCCC CCCTC C CTCC/T
rs33271230
MPD | dbSNP | MGI SNP Detail
Chr2:122432592fGatm : Intron1SNP TT   C T         C/T
rs29721207
MPD | dbSNP | MGI SNP Detail
Chr2:122432732fGatm : Intron1SNP GG   A G         A/G
rs27422731
MPD | dbSNP | MGI SNP Detail
Chr2:122432910fGatm : Intron2SNPCCCCCCTTCCTC CTCTCC/T
rs27422730
MPD | dbSNP | MGI SNP Detail
Chr2:122433758fGatm : Intron1SNPG GGGG AGGGG GGGGGA/G
rs29549612
MPD | dbSNP | MGI SNP Detail
Chr2:122434389fGatm : Intron1SNPAAA   G A         A/G
rs32970255
MPD | dbSNP | MGI SNP Detail
Chr2:122434447fGatm : Intron1SNPGGG   A G         A/G
rs27422729
MPD | dbSNP | MGI SNP Detail
Chr2:122434663fGatm : Intron1SNPG GGGG GGGGG GGGAGA/G
rs27422728
MPD | dbSNP | MGI SNP Detail
Chr2:122434679fGatm : Intron1SNPT TTT  CTTTT TTTTTC/T
rs27422727
MPD | dbSNP | MGI SNP Detail
Chr2:122434738fGatm : Intron2SNPTTCCCCCCCCCC TCTCCC/T
rs29621465
MPD | dbSNP | MGI SNP Detail
Chr2:122434966fGatm : Intron1SNP TT   C           C/T
rs29960086
MPD | dbSNP | MGI SNP Detail
Chr2:122434967fGatm : Intron1SNP GG   A           A/G
rs27422726
MPD | dbSNP | MGI SNP Detail
Chr2:122435063fGatm : Intron2SNPC CCCCTTCCTC CTCCCC/T
rs27422725
MPD | dbSNP | MGI SNP Detail
Chr2:122435092fGatm : Intron1SNPT TTTT CTTTT TTTTTC/T
rs27422724
MPD | dbSNP | MGI SNP Detail
Chr2:122435118fGatm : Intron1SNPG GGGG GGGTG GTGTGG/T
rs27422723
MPD | dbSNP | MGI SNP Detail
Chr2:122435340fGatm : Intron1SNPG GGGG AGGGG GGGGGA/G
rs27422722
MPD | dbSNP | MGI SNP Detail
Chr2:122435553fGatm : Coding-NonSynonymous1SNPC CCCC TCCCC CCCCCC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27422721
MPD | dbSNP | MGI SNP Detail
Chr2:122435855fGatm : Intron1SNPT TTTT CTTTT TTTTTC/T
rs27422720
MPD | dbSNP | MGI SNP Detail
Chr2:122435955fGatm : Intron2SNPA AAAAGGAAGA AGAGAA/G
rs27422719
MPD | dbSNP | MGI SNP Detail
Chr2:122436785fGatm : Intron2SNPC C CCGC CG  CG GCC/G
rs33686242
MPD | dbSNP | MGI SNP Detail
Chr2:122436790fGatm : Intron1SNP  C   A           A/C
rs27422718
MPD | dbSNP | MGI SNP Detail
Chr2:122437009fGatm : Locus-Region2SNPTTTTTTCCTTCT TCTCTC/T
rs33450109
MPD | dbSNP | MGI SNP Detail
Chr2:122437110fGatm : Locus-Region1SNP TT   C T         C/T
rs27422717
MPD | dbSNP | MGI SNP Detail
Chr2:122437187fGatm : Locus-Region2SNPCCCCCCTCCCTC CTCTCC/T
rs27422716
MPD | dbSNP | MGI SNP Detail
Chr2:122437312fGatm : Locus-Region2SNPAAAAAAGGAAGA AGAGAA/G
rs27422715
MPD | dbSNP | MGI SNP Detail
Chr2:122437350fGatm : Locus-Region1SNPA AAAA TAAAA AAAAAA/T

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last database update
06/05/2013
MGI 5.13
The Jackson Laboratory