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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Rfx5 regulatory factor X, 5 (influences HLA class II expression) MGI:1858421 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs30858039 MPD | dbSNP | MGI SNP Detail | Chr3:94756943 | f | Rfx5 : Locus-Region | 2 | SNP | A | A | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | ||
| rs33095734 MPD | dbSNP | MGI SNP Detail | Chr3:94757022 | f | Rfx5 : Locus-Region | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | A | A | A | A/T | |||
| rs33095737 MPD | dbSNP | MGI SNP Detail | Chr3:94757240 | f | Rfx5 : Locus-Region | 1 | SNP | G | G | G | G | G | T | G | T | G | G | G | G | T | G/T | ||||
| rs33095740 MPD | dbSNP | MGI SNP Detail | Chr3:94757308 | f | Rfx5 : Locus-Region | 1 | SNP | T | T | T | T | T | A | T | A | T | T | T | T | A | T | A/T | |||
| rs33090595 MPD | dbSNP | MGI SNP Detail | Chr3:94757383 | f | Rfx5 : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | A | T | A/T | |||
| rs33090597 MPD | dbSNP | MGI SNP Detail | Chr3:94757649 | f | Rfx5 : Locus-Region | 1 | SNP | C | C | C | C | C | G | C | G | C | C | C | C | G | C | C/G | |||
| rs33090599 MPD | dbSNP | MGI SNP Detail | Chr3:94757803 | f | Rfx5 : Locus-Region | 1 | SNP | A | A | A | A | A | A | T | A | A | A | A | A | A/T | |||||
| rs33090601 MPD | dbSNP | MGI SNP Detail | Chr3:94759099 | f | Rfx5 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||||
| rs30553963 MPD | dbSNP | MGI SNP Detail | Chr3:94759594 | f | Rfx5 : Intron | 2 | SNP | G | C | C | C | C | G | G | C | C | G | G | G | G | G | G | C/G | ||
| rs33090603 MPD | dbSNP | MGI SNP Detail | Chr3:94759730 | f | Rfx5 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||||
| rs33091946 MPD | dbSNP | MGI SNP Detail | Chr3:94760971 | f | Rfx5 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A/G | ||||
| rs33091948 MPD | dbSNP | MGI SNP Detail | Chr3:94761078 | f | Rfx5 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||
| rs33091951 MPD | dbSNP | MGI SNP Detail | Chr3:94761135 | f | Rfx5 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | T | C | C/T | |||
| rs33091953 MPD | dbSNP | MGI SNP Detail | Chr3:94761732 | f | Rfx5 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | |||
| rs31277825 MPD | dbSNP | MGI SNP Detail | Chr3:94761760 | f | Rfx5 : Coding-NonSynonymous | 1 | SNP | G | G | A | G | A/G | |||||||||||||
| rs30210852 MPD | dbSNP | MGI SNP Detail | Chr3:94763019 | f | Rfx5 : Coding-NonSynonymous | 1 | SNP | G | A | G | A | A/G | |||||||||||||
| rs33092855 MPD | dbSNP | MGI SNP Detail | Chr3:94763673 | f | Rfx5 : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | C/T | |||
| rs30012479 MPD | dbSNP | MGI SNP Detail | Chr3:94763739 | f | Rfx5 : mRNA-UTR | 1 | SNP | A | A | G | A | G | A/G | ||||||||||||
| rs33092856 MPD | dbSNP | MGI SNP Detail | Chr3:94764026 | f | Rfx5 : mRNA-UTR | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | G | C/G | ||||
| rs33092859 MPD | dbSNP | MGI SNP Detail | Chr3:94764214 | f | Rfx5 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | C | G | G | G | C | G | C/G | |||
| rs33092862 MPD | dbSNP | MGI SNP Detail | Chr3:94764253 | f | Rfx5 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | ||
| rs30752164 MPD | dbSNP | MGI SNP Detail | Chr3:94765169 | f | Rfx5 : mRNA-UTR | 1 | SNP | T | T | A | T | A/T | |||||||||||||
| rs30153940 MPD | dbSNP | MGI SNP Detail | Chr3:94765296 | f | Rfx5 : mRNA-UTR | 1 | SNP | G | G | A | A | A/G | |||||||||||||
| rs33093884 MPD | dbSNP | MGI SNP Detail | Chr3:94765499 | f | Rfx5 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | |||
| rs33093886 MPD | dbSNP | MGI SNP Detail | Chr3:94765781 | f | Rfx5 : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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