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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Chi3l1 chitinase 3-like 1 MGI:1340899 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs30879812 MPD | dbSNP | MGI SNP Detail | Chr1:136077125 | f | Chi3l1 : Locus-Region | 1 | SNP | C | T | C/T | |||||||||||||||
| rs30879811 MPD | dbSNP | MGI SNP Detail | Chr1:136077517 | f | Chi3l1 : Locus-Region | 1 | SNP | C | T | C/T | |||||||||||||||
| rs30879810 MPD | dbSNP | MGI SNP Detail | Chr1:136078260 | f | Chi3l1 : Locus-Region | 1 | SNP | G | A | A/G | |||||||||||||||
| rs30879809 MPD | dbSNP | MGI SNP Detail | Chr1:136078420 | f | Chi3l1 : Locus-Region | 1 | SNP | C | A | A/C | |||||||||||||||
| rs30879808 MPD | dbSNP | MGI SNP Detail | Chr1:136078868 | f | Chi3l1 : Locus-Region | 1 | SNP | G | C | C/G | |||||||||||||||
| rs31618116 MPD | dbSNP | MGI SNP Detail | Chr1:136078909 | f | Chi3l1 : Locus-Region | 1 | SNP | T | A | A | T | A/T | |||||||||||||
| rs30879807 MPD | dbSNP | MGI SNP Detail | Chr1:136079118 | f | Chi3l1 : Coding-NonSynonymous | 1 | SNP | T | C | C | C/T | ||||||||||||||
| rs30879806 MPD | dbSNP | MGI SNP Detail | Chr1:136079469 | f | Chi3l1 : Intron | 1 | SNP | T | C | C | C/T | ||||||||||||||
| rs30879805 MPD | dbSNP | MGI SNP Detail | Chr1:136079696 | f | Chi3l1 : Intron | 1 | SNP | T | C | C | C/T | ||||||||||||||
| rs30879804 MPD | dbSNP | MGI SNP Detail | Chr1:136079742 | f | Chi3l1 : Intron | 1 | SNP | A | G | G | A/G | ||||||||||||||
| rs30879163 MPD | dbSNP | MGI SNP Detail | Chr1:136080051 | f | Chi3l1 : Intron | 1 | SNP | C | T | T | C/T | ||||||||||||||
| rs30879162 MPD | dbSNP | MGI SNP Detail | Chr1:136080088 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | C | T | C/T | |||||||||||||||
| rs30879161 MPD | dbSNP | MGI SNP Detail | Chr1:136080217 | f | Chi3l1 : Coding-NonSynonymous | 1 | SNP | C | A | A | A/C | ||||||||||||||
| rs30879160 MPD | dbSNP | MGI SNP Detail | Chr1:136080531 | f | Chi3l1 : Intron | 1 | SNP | T | C | C/T | |||||||||||||||
| rs30879159 MPD | dbSNP | MGI SNP Detail | Chr1:136080596 | f | Chi3l1 : Intron | 1 | SNP | A | T | A/T | |||||||||||||||
| rs30879158 MPD | dbSNP | MGI SNP Detail | Chr1:136080636 | f | Chi3l1 : Intron | 1 | SNP | C | A | A/C | |||||||||||||||
| rs30879157 MPD | dbSNP | MGI SNP Detail | Chr1:136081189 | f | Chi3l1 : Intron | 1 | SNP | G | A | A/G | |||||||||||||||
| rs30879156 MPD | dbSNP | MGI SNP Detail | Chr1:136081236 | f | Chi3l1 : Intron | 1 | SNP | G | A | A/G | |||||||||||||||
| rs30879155 MPD | dbSNP | MGI SNP Detail | Chr1:136081308 | f | Chi3l1 : Intron | 1 | SNP | G | A | A | A/G | ||||||||||||||
| rs30879154 MPD | dbSNP | MGI SNP Detail | Chr1:136081789 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30878313 MPD | dbSNP | MGI SNP Detail | Chr1:136082021 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||
| rs30878312 MPD | dbSNP | MGI SNP Detail | Chr1:136082065 | f | Chi3l1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A/G | ||
| rs30878311 MPD | dbSNP | MGI SNP Detail | Chr1:136082073 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||
| rs30878310 MPD | dbSNP | MGI SNP Detail | Chr1:136082116 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||
| rs30878309 MPD | dbSNP | MGI SNP Detail | Chr1:136082142 | f | Chi3l1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | C/G | ||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs30878308 MPD | dbSNP | MGI SNP Detail | Chr1:136083035 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||
| rs30878307 MPD | dbSNP | MGI SNP Detail | Chr1:136083093 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G/T | ||
| rs30878306 MPD | dbSNP | MGI SNP Detail | Chr1:136083135 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | G | A/G | ||
| rs30878305 MPD | dbSNP | MGI SNP Detail | Chr1:136083374 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||
| rs30878304 MPD | dbSNP | MGI SNP Detail | Chr1:136083564 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | A | C | C | C | C | C | C | A/C | ||
| rs30877453 MPD | dbSNP | MGI SNP Detail | Chr1:136083602 | f | Chi3l1 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | G | G | C/G | ||
| rs30877452 MPD | dbSNP | MGI SNP Detail | Chr1:136083622 | f | Chi3l1 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | T | G | G | G | T | T | G/T | |||
| rs30877451 MPD | dbSNP | MGI SNP Detail | Chr1:136083760 | f | Chi3l1 : Intron | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | A | T | A | A/T | |||
| rs30877450 MPD | dbSNP | MGI SNP Detail | Chr1:136083908 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | G | G | T | T | T | G | G | G/T | ||
| rs30877449 MPD | dbSNP | MGI SNP Detail | Chr1:136084270 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | G/T | ||
| rs30877448 MPD | dbSNP | MGI SNP Detail | Chr1:136084278 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | G | C | C | C | C | G | C/G | ||
| rs30877447 MPD | dbSNP | MGI SNP Detail | Chr1:136084429 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | C | T | T | T | T | C | C/T | ||
| rs13468626 MPD | dbSNP | MGI SNP Detail | Chr1:136084513 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | T | T | T | C | C/T | |||||||||||||
| rs30877446 MPD | dbSNP | MGI SNP Detail | Chr1:136084606 | f | Chi3l1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | ||
| rs30850969 MPD | dbSNP | MGI SNP Detail | Chr1:136084977 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | T | C/T | |||||||||||||
| rs30457004 MPD | dbSNP | MGI SNP Detail | Chr1:136084978 | f | Chi3l1 : Intron | 2 | SNP | T | T | T | G | T | T | T | T | G | G | T | T | T | T | T | G | T | G/T |
| rs30877444 MPD | dbSNP | MGI SNP Detail | Chr1:136085019 | f | Chi3l1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | ||
| rs30876553 MPD | dbSNP | MGI SNP Detail | Chr1:136085106 | f | Chi3l1 : Coding-NonSynonymous | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C/T | ||
| rs30876552 MPD | dbSNP | MGI SNP Detail | Chr1:136085242 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | C/G | ||
| rs30876551 MPD | dbSNP | MGI SNP Detail | Chr1:136085296 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30876550 MPD | dbSNP | MGI SNP Detail | Chr1:136085311 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30876549 MPD | dbSNP | MGI SNP Detail | Chr1:136085322 | f | Chi3l1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | G/T | ||
| rs30876548 MPD | dbSNP | MGI SNP Detail | Chr1:136085452 | f | Chi3l1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A/G | ||
| rs30876547 MPD | dbSNP | MGI SNP Detail | Chr1:136085484 | f | Chi3l1 : Intron | 2 | SNP | G | G | G | A | G | G | G | G | A | A | G | A | G | G | G | G | A | A/G |
| rs30876546 MPD | dbSNP | MGI SNP Detail | Chr1:136085677 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs30876545 MPD | dbSNP | MGI SNP Detail | Chr1:136085756 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30876544 MPD | dbSNP | MGI SNP Detail | Chr1:136085934 | f | Chi3l1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30884108 MPD | dbSNP | MGI SNP Detail | Chr1:136086081 | f | Chi3l1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||
| rs30884107 MPD | dbSNP | MGI SNP Detail | Chr1:136086241 | f | Chi3l1 : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||
| rs13468627 MPD | dbSNP | MGI SNP Detail | Chr1:136086255 | f | Chi3l1 : mRNA-UTR | 2 | SNP | C | C | T | C | C | C | C | T | T | C | T | C | C | C | C | T | C/T | |
| rs30884106 MPD | dbSNP | MGI SNP Detail | Chr1:136086329 | f | Chi3l1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30884105 MPD | dbSNP | MGI SNP Detail | Chr1:136086448 | f | Chi3l1 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||
| rs30884104 MPD | dbSNP | MGI SNP Detail | Chr1:136086478 | f | Chi3l1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30883213 MPD | dbSNP | MGI SNP Detail | Chr1:136086596 | f | Chi3l1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs30883212 MPD | dbSNP | MGI SNP Detail | Chr1:136086626 | f | Chi3l1 : Locus-Region | 2 | SNP | G | G | G | A | G | G | G | G | A | A | G | A | G | G | G | G | A | A/G |
| rs30883211 MPD | dbSNP | MGI SNP Detail | Chr1:136086740 | f | Chi3l1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||
| rs30883210 MPD | dbSNP | MGI SNP Detail | Chr1:136086876 | f | Chi3l1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||
| rs30883209 MPD | dbSNP | MGI SNP Detail | Chr1:136087081 | f | Chi3l1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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