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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Cog1
component of oligomeric golgi complex 1
MGI:1333873

192 matching SNPs displayed
Full result set is also available in a tab-delimited format.
Exclude SNPs that map to multiple locations

Legend
*The reference flanking sequence for this SNP maps to multiple locations in the mouse genome.
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47934707 *
MPD | dbSNP | MGI SNP Detail
Chr11:46450283fHlb290 : within coordinates of1SNP CA                                            A/C
rs27017592 *
MPD | dbSNP | MGI SNP Detail
Chr11:46450698fHlb290 : within coordinates of1SNPC CCCC   C CCCC      C          C      C T   C C/T
rs50200950
MPD | dbSNP | MGI SNP Detail
Chr11:113647588fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CT        C                                   C/T
rs50709422
MPD | dbSNP | MGI SNP Detail
Chr11:113647923fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GA        G                                   A/G
rs50683264
MPD | dbSNP | MGI SNP Detail
Chr11:113647979fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CA        C                                   A/C
rs51968791
MPD | dbSNP | MGI SNP Detail
Chr11:113647983fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CT        C                                   C/T
rs46967244
MPD | dbSNP | MGI SNP Detail
Chr11:113647997fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GA        G                                   A/G
rs49435611
MPD | dbSNP | MGI SNP Detail
Chr11:113648023fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP  T        C                                   C/T
rs47310786
MPD | dbSNP | MGI SNP Detail
Chr11:113648059fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP AG        A                                   A/G
rs51285623
MPD | dbSNP | MGI SNP Detail
Chr11:113648123fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP AG        A                                   A/G
rs46629368
MPD | dbSNP | MGI SNP Detail
Chr11:113648163fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GA        G                                   A/G
rs49246143
MPD | dbSNP | MGI SNP Detail
Chr11:113648315fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CT        C                                   C/T
rs51329015
MPD | dbSNP | MGI SNP Detail
Chr11:113648323fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CT        C                                   C/T
rs49378375
MPD | dbSNP | MGI SNP Detail
Chr11:113648332fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP AT        A                                   A/T
rs51729176
MPD | dbSNP | MGI SNP Detail
Chr11:113648394fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GA        G                                   A/G
rs48302225
MPD | dbSNP | MGI SNP Detail
Chr11:113648456fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GA        G                                   A/G
rs49757626
MPD | dbSNP | MGI SNP Detail
Chr11:113648514fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GC        G                                   C/G
rs108817133
MPD | dbSNP | MGI SNP Detail
Chr11:113648657fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP AG        A                                   A/G
rs108684496
MPD | dbSNP | MGI SNP Detail
Chr11:113648744fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CT                                            C/T
rs108626882
MPD | dbSNP | MGI SNP Detail
Chr11:113648751fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP GA        G                                   A/G
rs107996345
MPD | dbSNP | MGI SNP Detail
Chr11:113648771fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP  T                                            T
rs48649675
MPD | dbSNP | MGI SNP Detail
Chr11:113648806fBolt : within coordinates of
Cog1 : Locus-Region
Slc39a11 : within coordinates of
1SNP CT        C                                   C/T
rs29440291
MPD | dbSNP | MGI SNP Detail
Chr11:113650503fBolt : within coordinates of
Cog1 : Intron
2SNPTTC                                            C/T
rs29437832
MPD | dbSNP | MGI SNP Detail
Chr11:113650511fBolt : within coordinates of
Cog1 : Intron
2SNPTTC                                            C/T
rs29435461
MPD | dbSNP | MGI SNP Detail
Chr11:113650513fBolt : within coordinates of
Cog1 : Intron
2SNPAAG                                            A/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs29409155
MPD | dbSNP | MGI SNP Detail
Chr11:113650547fBolt : within coordinates of
Cog1 : Intron
2SNPCCT                                            C/T
rs29475872
MPD | dbSNP | MGI SNP Detail
Chr11:113650697fBolt : within coordinates of
Cog1 : Intron
2SNPCCT   C    C                                   C/T
rs29390448
MPD | dbSNP | MGI SNP Detail
Chr11:113650743fBolt : within coordinates of
Cog1 : Intron
2SNPAAG   A    A                                   A/G
rs29427292
MPD | dbSNP | MGI SNP Detail
Chr11:113650805fBolt : within coordinates of
Cog1 : Intron
2SNPTTC   T    T                                   C/T
rs29422856
MPD | dbSNP | MGI SNP Detail
Chr11:113651100fBolt : within coordinates of
Cog1 : Intron
2SNP  T   G    G                                   G/T
rs29404124
MPD | dbSNP | MGI SNP Detail
Chr11:113651154fBolt : within coordinates of
Cog1 : Intron
1SNP  T   C    C                                   C/T
rs46775084
MPD | dbSNP | MGI SNP Detail
Chr11:113651528fBolt : within coordinates of
Cog1 : Intron
1SNP TC        T                                   C/T
rs50787460
MPD | dbSNP | MGI SNP Detail
Chr11:113651534fBolt : within coordinates of
Cog1 : Intron
1SNP GC        G                                   C/G
rs52055570
MPD | dbSNP | MGI SNP Detail
Chr11:113651536fBolt : within coordinates of
Cog1 : Intron
1SNP AT        A                                   A/T
rs108363491
MPD | dbSNP | MGI SNP Detail
Chr11:113651697fBolt : within coordinates of
Cog1 : Intron
1SNP AT                                            A/T
rs47266178
MPD | dbSNP | MGI SNP Detail
Chr11:113651773fBolt : within coordinates of
Cog1 : Intron
1SNP GA                                            A/G
rs47663241
MPD | dbSNP | MGI SNP Detail
Chr11:113651833fBolt : within coordinates of
Cog1 : Intron
1SNP AT                                            A/T
rs51290181
MPD | dbSNP | MGI SNP Detail
Chr11:113651889fBolt : within coordinates of
Cog1 : Coding-Synonymous
1SNP TC                                            C/T
rs48750165
MPD | dbSNP | MGI SNP Detail
Chr11:113651907fBolt : within coordinates of
Cog1 : Coding-Synonymous
1SNP CT                                            C/T
rs50887637
MPD | dbSNP | MGI SNP Detail
Chr11:113652014fBolt : within coordinates of
Cog1 : Coding-NonSynonymous
1SNP AG                                            A/G
rs51384000
MPD | dbSNP | MGI SNP Detail
Chr11:113652117fBolt : within coordinates of
Cog1 : Intron
1SNP TG                                            G/T
rs48180221
MPD | dbSNP | MGI SNP Detail
Chr11:113652231fBolt : within coordinates of
Cog1 : Coding-Synonymous
1SNP TG        T                                   G/T
rs29389166
MPD | dbSNP | MGI SNP Detail
Chr11:113652675fBolt : within coordinates of
Cog1 : Coding-Synonymous
3SNP C    T    T       C             C             C/T
rs30925927
MPD | dbSNP | MGI SNP Detail
Chr11:113652726rBolt : within coordinates of
Cog1 : Intron
2SNP GA        G                                   A/G
rs29442248
MPD | dbSNP | MGI SNP Detail
Chr11:113652731fBolt : within coordinates of
Cog1 : Intron
3SNP TC   C    C       T             T             C/T
rs51717199
MPD | dbSNP | MGI SNP Detail
Chr11:113653029fBolt : within coordinates of
Cog1 : Intron
1SNP GA        G                                   A/G
rs217714568
MPD | dbSNP | MGI SNP Detail
Chr11:113653048fBolt : within coordinates of
Cog1 : Intron
1SNP                   A             A             A
rs50622031
MPD | dbSNP | MGI SNP Detail
Chr11:113653150fBolt : within coordinates of
Cog1 : Intron
1SNP  T        C                                   C/T
rs51109107
MPD | dbSNP | MGI SNP Detail
Chr11:113653152fBolt : within coordinates of
Cog1 : Intron
2SNP  C        A       C             C             A/C
rs261187671
MPD | dbSNP | MGI SNP Detail
Chr11:113653256fBolt : within coordinates of
Cog1 : Intron
1SNP                   A             A             A
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs223858010
MPD | dbSNP | MGI SNP Detail
Chr11:113653278fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs232089045
MPD | dbSNP | MGI SNP Detail
Chr11:113653282fBolt : within coordinates of
Cog1 : Intron
1SNP                   A             A             A
rs52119440
MPD | dbSNP | MGI SNP Detail
Chr11:113653566fBolt : within coordinates of
Cog1 : Intron
1SNP CA        A                                   A/C
rs29400988
MPD | dbSNP | MGI SNP Detail
Chr11:113653571fBolt : within coordinates of
Cog1 : Intron
2SNP CC        G                                   C/G
rs52463231
MPD | dbSNP | MGI SNP Detail
Chr11:113653625fBolt : within coordinates of
Cog1 : Intron
2SNP TC        C       C             T             C/T
rs221140332
MPD | dbSNP | MGI SNP Detail
Chr11:113653733fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs242938690
MPD | dbSNP | MGI SNP Detail
Chr11:113653760fBolt : within coordinates of
Cog1 : Intron
1SNP                   G             T             G/T
rs49068616
MPD | dbSNP | MGI SNP Detail
Chr11:113653837fBolt : within coordinates of
Cog1 : Intron
2SNP AG        G       A             A             A/G
rs221174335
MPD | dbSNP | MGI SNP Detail
Chr11:113653874fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs241346977
MPD | dbSNP | MGI SNP Detail
Chr11:113654099fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs108525478
MPD | dbSNP | MGI SNP Detail
Chr11:113654187fBolt : within coordinates of
Cog1 : Intron
2SNP TC        C       T             T             C/T
rs47979098
MPD | dbSNP | MGI SNP Detail
Chr11:113654323fBolt : within coordinates of
Cog1 : Intron
2SNP C         T       C             C             C/T
rs51637917
MPD | dbSNP | MGI SNP Detail
Chr11:113654420fBolt : within coordinates of
Cog1 : Intron
2SNP C         T       C             T             C/T
rs257989069
MPD | dbSNP | MGI SNP Detail
Chr11:113654545fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs226586500
MPD | dbSNP | MGI SNP Detail
Chr11:113654703fBolt : within coordinates of
Cog1 : Intron
1SNP                   G             G             G
rs259912019
MPD | dbSNP | MGI SNP Detail
Chr11:113654847fBolt : within coordinates of
Cog1 : Intron
1SNP                   G             G             G
rs217742509
MPD | dbSNP | MGI SNP Detail
Chr11:113654932fBolt : within coordinates of
Cog1 : Intron
1SNP                   A             A             A
rs29426471
MPD | dbSNP | MGI SNP Detail
Chr11:113655049fBolt : within coordinates of
Cog1 : Coding-Synonymous
2SNPT C   C    C       T             T             C/T
rs248888795
MPD | dbSNP | MGI SNP Detail
Chr11:113655219fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs29462865
MPD | dbSNP | MGI SNP Detail
Chr11:113655362fBolt : within coordinates of
Cog1 : Intron
3SNP CT   T    T       C             C             C/T
rs29395720
MPD | dbSNP | MGI SNP Detail
Chr11:113655390fBolt : within coordinates of
Cog1 : Intron
3SNP CT   T    T       C             C             C/T
rs29428822
MPD | dbSNP | MGI SNP Detail
Chr11:113655496fBolt : within coordinates of
Cog1 : Intron
3SNP AT   T    T       A             A             A/T
rs29429856
MPD | dbSNP | MGI SNP Detail
Chr11:113655508fBolt : within coordinates of
Cog1 : Intron
3SNP GG   A    A       G             G             A/G
rs29388069
MPD | dbSNP | MGI SNP Detail
Chr11:113655646fBolt : within coordinates of
Cog1 : Intron
3SNP GT   T    T       G             G             G/T
rs13481240
MPD | dbSNP | MGI SNP Detail
Chr11:113655729fBolt : within coordinates of
Cog1 : Intron
4SNPGGGAGGAAA GAGGGGGGGGGAAAAAGGAGGGGGGGGGAGG GGGGGA/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs3699250
MPD | dbSNP | MGI SNP Detail
Chr11:113656102fBolt : within coordinates of
Cog1 : Coding-Synonymous
2SNPC     T            C             C             C/T
rs3699253
MPD | dbSNP | MGI SNP Detail
Chr11:113656108fBolt : within coordinates of
Cog1 : Coding-Synonymous
2SNPT     G            T             T             G/T
rs3700356
MPD | dbSNP | MGI SNP Detail
Chr11:113656250fBolt : within coordinates of
Cog1 : Coding-Synonymous
2SNPA     C            A             A             A/C
rs3700383
MPD | dbSNP | MGI SNP Detail
Chr11:113656262fBolt : within coordinates of
Cog1 : Coding-NonSynonymous
2SNPA     G            A             A             A/G
rs46122254
MPD | dbSNP | MGI SNP Detail
Chr11:113656468fBolt : within coordinates of
Cog1 : Coding-Synonymous
1SNP                   C             C             C
rs45897306
MPD | dbSNP | MGI SNP Detail
Chr11:113656469fBolt : within coordinates of
Cog1 : Coding-NonSynonymous
1SNP                   A             A             A
rs226719018
MPD | dbSNP | MGI SNP Detail
Chr11:113656946fBolt : within coordinates of
Cog1 : Intron
1SNP                   T             T             T
rs27017628
MPD | dbSNP | MGI SNP Detail
Chr11:113656954fBolt : within coordinates of
Cog1 : Intron
3SNP CCA C   C ACCC    C A          CC     C C   C A/C
rs27017627
MPD | dbSNP | MGI SNP Detail
Chr11:113657068fBolt : within coordinates of
Cog1 : Coding-Synonymous
3SNP TCC C   C CTCT    T C          TT     T C   T C/T
rs27017626
MPD | dbSNP | MGI SNP Detail
Chr11:113657152fBolt : within coordinates of
Cog1 : Intron
2SNP CGCCG   G CCCC      C          C      C     C C/G
rs45842059
MPD | dbSNP | MGI SNP Detail
Chr11:113657219fBolt : within coordinates of
Cog1 : Intron
1SNP CG        C                                   C/G
rs3720721
MPD | dbSNP | MGI SNP Detail
Chr11:113657289fBolt : within coordinates of
Cog1 : Intron
4SNPGGGAGGA  G AG G    G A          GG     G G   G A/G
rs27017625
MPD | dbSNP | MGI SNP Detail
Chr11:113657377fBolt : within coordinates of
Cog1 : Coding-Synonymous
2SNPCCACCA   C  CAC      C          C      C C   C A/C
rs27017624
MPD | dbSNP | MGI SNP Detail
Chr11:113657389fBolt : within coordinates of
Cog1 : Coding-Synonymous
1SNP  A  A   G  AGA      A          A      A A   A A/G
rs27017623
MPD | dbSNP | MGI SNP Detail
Chr11:113657431fBolt : within coordinates of
Cog1 : Coding-Synonymous
2SNP TCTTC   T TTCT      T          T      T T   T C/T
rs27017622
MPD | dbSNP | MGI SNP Detail
Chr11:113657626fBolt : within coordinates of
Cog1 : Intron
1SNP   A     G  AGA      A          A      A     G A/G
rs27017621
MPD | dbSNP | MGI SNP Detail
Chr11:113657640fBolt : within coordinates of
Cog1 : Intron
2SNP  GAA    G AAAA      A          A      A G   A A/G
rs27017620
MPD | dbSNP | MGI SNP Detail
Chr11:113657674fBolt : within coordinates of
Cog1 : Intron
2SNPG AGGA   A GGGG      G          G      G A   G A/G
rs27017619
MPD | dbSNP | MGI SNP Detail
Chr11:113657717fBolt : within coordinates of
Cog1 : Intron
1SNPA AAAA   A AAAA      A          A      A A   T A/T
rs27017618
MPD | dbSNP | MGI SNP Detail
Chr11:113657745fBolt : within coordinates of
Cog1 : Intron
1SNP  GAAG     AAGA      A          A      A G   G A/G
rs51104748
MPD | dbSNP | MGI SNP Detail
Chr11:113657759fBolt : within coordinates of
Cog1 : Intron
1SNP  G                                            G
rs49537836
MPD | dbSNP | MGI SNP Detail
Chr11:113657835fBolt : within coordinates of
Cog1 : Intron
1SNP  C                                            C
rs27017617
MPD | dbSNP | MGI SNP Detail
Chr11:113657935fBolt : within coordinates of
Cog1 : Intron
1SNPT CTTC   T TTTT      T          T      T C   T C/T
rs27017616
MPD | dbSNP | MGI SNP Detail
Chr11:113658345fBolt : within coordinates of
Cog1 : Intron
1SNP   CC    T CCCC      C          C      C C   C C/T
rs27017615
MPD | dbSNP | MGI SNP Detail
Chr11:113658347fBolt : within coordinates of
Cog1 : Intron
1SNP  CGGC   G  GGG      G          G      G C   G C/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27017614
MPD | dbSNP | MGI SNP Detail
Chr11:113658378fBolt : within coordinates of
Cog1 : Intron
1SNP  AGGA   G GGGG      G          G      G A   G A/G
rs27017613
MPD | dbSNP | MGI SNP Detail
Chr11:113658379fBolt : within coordinates of
Cog1 : Intron
1SNP   TT    T TTGT      T          T      T     T G/T
rs46586213
MPD | dbSNP | MGI SNP Detail
Chr11:113658668fBolt : within coordinates of
Cog1 : Intron
1SNP AG        A                                   A/G
rs50664707
MPD | dbSNP | MGI SNP Detail
Chr11:113658679fBolt : within coordinates of
Cog1 : Intron
1SNP GA                                            A/G
rs27017612
MPD | dbSNP | MGI SNP Detail
Chr11:113658739fBolt : within coordinates of
Cog1 : Intron
1SNPG GGGG   A GGGG      G          G      G G   G A/G
rs27017611
MPD | dbSNP | MGI SNP Detail
Chr11:113658778fBolt : within coordinates of
Cog1 : Intron
2SNP TC TC     TTT                           C   T C/T
rs27017610
MPD | dbSNP | MGI SNP Detail
Chr11:113658789fBolt : within coordinates of
Cog1 : Intron
1SNP  AAAA   T  A A      A          A      A A   A A/T
rs27017609
MPD | dbSNP | MGI SNP Detail
Chr11:113658877fBolt : within coordinates of
Cog1 : Intron
2SNPGGAGGA   G GGGG      G          G      G A   G A/G
rs27017608
MPD | dbSNP | MGI SNP Detail
Chr11:113658895fBolt : within coordinates of
Cog1 : Intron
1SNPC CCCC   C CCTC      C          C      C C   C C/T
rs27017607
MPD | dbSNP | MGI SNP Detail
Chr11:113658995fBolt : within coordinates of
Cog1 : Intron
2SNPTTCTTC   T  TTT      T          T      T C   T C/T
rs27017606
MPD | dbSNP | MGI SNP Detail
Chr11:113659059fBolt : within coordinates of
Cog1 : Intron
2SNP AGAA      AAGA      A          A      A     A A/G
rs48928439
MPD | dbSNP | MGI SNP Detail
Chr11:113659064fBolt : within coordinates of
Cog1 : Intron
1SNP CT                                            C/T
rs27017605
MPD | dbSNP | MGI SNP Detail
Chr11:113659148fBolt : within coordinates of
Cog1 : Intron
2SNP ATAAT   T AA A      A          A      A T   A A/T
rs27017604
MPD | dbSNP | MGI SNP Detail
Chr11:113659394fBolt : within coordinates of
Cog1 : Intron
1SNPC  CC    C CCTC      C          C      C     C C/T
rs50775539
MPD | dbSNP | MGI SNP Detail
Chr11:113659396fBolt : within coordinates of
Cog1 : Intron
1SNP GA        G                                   A/G
rs27017603
MPD | dbSNP | MGI SNP Detail
Chr11:113659402fBolt : within coordinates of
Cog1 : Intron
2SNP GAGG    A GG G      G          G      G     G A/G
rs47883223
MPD | dbSNP | MGI SNP Detail
Chr11:113659403fBolt : within coordinates of
Cog1 : Intron
1SNP GC        G                                   C/G
rs51282045
MPD | dbSNP | MGI SNP Detail
Chr11:113659412fBolt : within coordinates of
Cog1 : Intron
1SNP GA        G                                   A/G
rs27017602
MPD | dbSNP | MGI SNP Detail
Chr11:113659528fBolt : within coordinates of
Cog1 : Intron
1SNPG GGGG   C GGCG      G          G      G G   C C/G
rs27017601
MPD | dbSNP | MGI SNP Detail
Chr11:113659606fBolt : within coordinates of
Cog1 : Intron
1SNPA AAAA   G AAAA      A          A      A A   G A/G
rs27017600
MPD | dbSNP | MGI SNP Detail
Chr11:113659645fBolt : within coordinates of
Cog1 : Intron
1SNPC TCCT   C CCCC      C          C      C T   C C/T
rs251979775
MPD | dbSNP | MGI SNP Detail
Chr11:113660185fBolt : within coordinates of
Cog1 : Intron
1SNP                   G             A             A/G
rs27017599
MPD | dbSNP | MGI SNP Detail
Chr11:113660900fBolt : within coordinates of
Cog1 : Intron
Fam104a : Intron
1SNP  TC T   T  CTC      C          C      C T   C C/T
rs27017598
MPD | dbSNP | MGI SNP Detail
Chr11:113660948fBolt : within coordinates of
Cog1 : Coding-Synonymous
Fam104a : Intron
1SNP  AAAA   A  AAA      A          A      A A   G A/G
rs6236076
MPD | dbSNP | MGI SNP Detail
Chr11:113661129fBolt : within coordinates of
Cog1 : Intron
Fam104a : Intron
1SNP      T   C                                    C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs6236500
MPD | dbSNP | MGI SNP Detail
Chr11:113661134fBolt : within coordinates of
Cog1 : Intron
Fam104a : Intron
1SNP      C   T                                    C/T
rs6236568
MPD | dbSNP | MGI SNP Detail
Chr11:113661173fBolt : within coordinates of
Cog1 : Coding-Synonymous
Fam104a : Intron
1SNP      A   G                                    A/G
rs6236594
MPD | dbSNP | MGI SNP Detail
Chr11:113661189fBolt : within coordinates of
Cog1 : Coding-NonSynonymous
Fam104a : Intron
1SNP      A   G                                    A/G
rs6236607
MPD | dbSNP | MGI SNP Detail
Chr11:113661192fBolt : within coordinates of
Cog1 : Coding-NonSynonymous
Fam104a : Intron
1SNP      A   G                                    A/G
rs27017597
MPD | dbSNP | MGI SNP Detail
Chr11:113661194fBolt : within coordinates of
Cog1 : Coding-Synonymous
Fam104a : Intron
1SNP   T     C TTTT      T          T      T     T C/T
rs6237113
MPD | dbSNP | MGI SNP Detail
Chr11:113661262fBolt : within coordinates of
Cog1 : Intron
Fam104a : Intron
1SNP      T   C                                    C/T
rs6237162
MPD | dbSNP | MGI SNP Detail
Chr11:113661288fBolt : within coordinates of
Cog1 : Intron
Fam104a : Intron
1SNP      C   T                                    C/T
rs6237220
MPD | dbSNP | MGI SNP Detail
Chr11:113661316fBolt : within coordinates of
Cog1 : Intron
Fam104a : Intron
3SNP TCTTCT  CCTTTT      T          T      T C   T C/T
rs6238188
MPD | dbSNP | MGI SNP Detail
Chr11:113661475fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
2SNP CG   C   GC                                   C/G
rs6238190
MPD | dbSNP | MGI SNP Detail
Chr11:113661477fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
3SNPA GAA A  GGAAGA      A          A      A G   A A/G
rs27017596
MPD | dbSNP | MGI SNP Detail
Chr11:113661771fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
1SNPT TTTT   C TTCT      T          T      T T   T C/T
rs48770680
MPD | dbSNP | MGI SNP Detail
Chr11:113661827fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
1SNP AC                                            A/C
rs46218060
MPD | dbSNP | MGI SNP Detail
Chr11:113661844fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
1SNP GT                                            G/T
rs27017595
MPD | dbSNP | MGI SNP Detail
Chr11:113661990fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
3SNPTTCTTC   C TTCT      T          T      T C   T C/T
rs27017594
MPD | dbSNP | MGI SNP Detail
Chr11:113662254fBolt : within coordinates of
Cog1 : Coding-Synonymous
Fam104a : mRNA-UTR
3SNPTTCTTC   C TTCT      T          T      T C   T C/T
rs29431996
MPD | dbSNP | MGI SNP Detail
Chr11:113662487fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
2SNP CG        C                                   C/G
rs27017593
MPD | dbSNP | MGI SNP Detail
Chr11:113662535fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
2SNPTTGTTG   G TTTT      T          T      T G   T G/T
rs29462721
MPD | dbSNP | MGI SNP Detail
Chr11:113662618fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
1SNP CA   C                                        A/C
rs47934707 *
MPD | dbSNP | MGI SNP Detail
Chr11:113662618fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : within coordinates of
1SNP CA                                            A/C
rs29424751
MPD | dbSNP | MGI SNP Detail
Chr11:113662740fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
2SNP GA   G    G                                   A/G
rs48298757
MPD | dbSNP | MGI SNP Detail
Chr11:113662744fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
1SNP CA        C                                   A/C
rs29402746
MPD | dbSNP | MGI SNP Detail
Chr11:113662758fBolt : within coordinates of
Cog1 : Intron
Fam104a : mRNA-UTR
2SNP GA   G    G                                   A/G
rs27017592 *
MPD | dbSNP | MGI SNP Detail
Chr11:113663029fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : within coordinates of
1SNPC CCCC   C CCCC      C          C      C T   C C/T
rs27017591
MPD | dbSNP | MGI SNP Detail
Chr11:113663108fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : mRNA-UTR
4SNPC TCC C  T CC C    T C          CC     C T   T C/T
rs29410342
MPD | dbSNP | MGI SNP Detail
Chr11:113663111fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : mRNA-UTR
2SNPC T   C    C                                   C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27017590
MPD | dbSNP | MGI SNP Detail
Chr11:113663301fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : mRNA-UTR
1SNPG GGGG   A GG G      G          G      G G   G A/G
rs27017589
MPD | dbSNP | MGI SNP Detail
Chr11:113663355fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Coding-NonSynonymous
3SNPC TCCTC  C CCCC      C          C      C T   C C/T
rs27017588
MPD | dbSNP | MGI SNP Detail
Chr11:113663628fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNPG AGGA     GGGG    A G          GG     G A   A A/G
rs27017587
MPD | dbSNP | MGI SNP Detail
Chr11:113663919fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNPG TGGT      GGG      G          G      G T   G G/T
rs27017586
MPD | dbSNP | MGI SNP Detail
Chr11:113664033fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNPGGTGGTG  G GGGG      G          G      G T   G G/T
rs27017585
MPD | dbSNP | MGI SNP Detail
Chr11:113664226fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNP TCTTCT  T TTCT      T          T      T C   T C/T
rs27017584
MPD | dbSNP | MGI SNP Detail
Chr11:113664356fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNP CACCAC  A CCAC      C          C      C A   C A/C
rs27017583
MPD | dbSNP | MGI SNP Detail
Chr11:113664467fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNPGGAGGAG  G GG G      G          G      G A   G A/G
rs29409235
MPD | dbSNP | MGI SNP Detail
Chr11:113664661fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP TC   T    T                                   C/T
rs29427881
MPD | dbSNP | MGI SNP Detail
Chr11:113664679fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP GT   G    G                                   G/T
rs27017582
MPD | dbSNP | MGI SNP Detail
Chr11:113664727fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNP TC  CT  C TTTT                 T      T C   T C/T
rs27017581
MPD | dbSNP | MGI SNP Detail
Chr11:113664922fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNPAAGAAGA    AAGA      A          A      A G   A A/G
rs27017580
MPD | dbSNP | MGI SNP Detail
Chr11:113665005fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
3SNPAAGAAGA    AA A      A          A      A G   A A/G
rs29440199
MPD | dbSNP | MGI SNP Detail
Chr11:113665046fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNPGGA   G    G                                   A/G
rs29397395
MPD | dbSNP | MGI SNP Detail
Chr11:113665223fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNPCCT   C    C                                   C/T
rs47164959
MPD | dbSNP | MGI SNP Detail
Chr11:113665381fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNP TC        T                                   C/T
rs247604427
MPD | dbSNP | MGI SNP Detail
Chr11:113665667fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNP                   G             A             A/G
rs29418126
MPD | dbSNP | MGI SNP Detail
Chr11:113665824fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP  C   G                                        C/G
rs29387497
MPD | dbSNP | MGI SNP Detail
Chr11:113665984fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP  A   C                                        A/C
rs29449790
MPD | dbSNP | MGI SNP Detail
Chr11:113666077fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP  G   T                                        G/T
rs29385754
MPD | dbSNP | MGI SNP Detail
Chr11:113666703fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP GA   G    G                                   A/G
rs27017579
MPD | dbSNP | MGI SNP Detail
Chr11:113666706fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNPGGAGGA   G GGGG      G          G      G A   G A/G
rs27017578
MPD | dbSNP | MGI SNP Detail
Chr11:113666725fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNP  A AA   T  AAA      A          A      A A   A A/T
rs215565817
MPD | dbSNP | MGI SNP Detail
Chr11:113666765fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNP                   A             T             A/T
rs27017577
MPD | dbSNP | MGI SNP Detail
Chr11:113666842fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNPC CCCC   T CCCC      C          C      C C   C C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27017576
MPD | dbSNP | MGI SNP Detail
Chr11:113666850fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNPA AAAA   A  ATA      A          A      A A   A A/T
rs27017575
MPD | dbSNP | MGI SNP Detail
Chr11:113666928fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNPC CCCC   T CCCC      C          C      C C   C C/T
rs48736805
MPD | dbSNP | MGI SNP Detail
Chr11:113666983fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
1SNP CT                                            C/T
rs45727683
MPD | dbSNP | MGI SNP Detail
Chr11:113667011fBolt : within coordinates of
Cog1 : within coordinates of
Fam104a : Intron
2SNP AA                A             G             A/G
rs27017574
MPD | dbSNP | MGI SNP Detail
Chr11:113667093fBolt : within coordinates of
Cog1 : 39 bp downstream of
Fam104a : Intron
1SNPG GGGG   A GGGG      G          G      G G   G A/G
rs27017573
MPD | dbSNP | MGI SNP Detail
Chr11:113667193fBolt : within coordinates of
Cog1 : 139 bp downstream of
Fam104a : Intron
1SNP  GGGG     GGGG      G          G      G A   G A/G
rs27017572
MPD | dbSNP | MGI SNP Detail
Chr11:113667222fBolt : within coordinates of
Cog1 : 168 bp downstream of
Fam104a : Intron
1SNP  CCCC   G CCCC      C          C      C C   C C/G
rs27017571
MPD | dbSNP | MGI SNP Detail
Chr11:113667324fBolt : within coordinates of
Cog1 : 270 bp downstream of
Fam104a : Intron
1SNP  CCCC   T  C C      C          C      C C   C C/T
rs46552568
MPD | dbSNP | MGI SNP Detail
Chr11:113667420fBolt : within coordinates of
Cog1 : 366 bp downstream of
Fam104a : Intron
2SNP AG        A       G             A             A/G
rs108918301
MPD | dbSNP | MGI SNP Detail
Chr11:113667531fBolt : within coordinates of
Cog1 : 477 bp downstream of
Fam104a : Intron
1SNP CG                                            C/G
rs108613378
MPD | dbSNP | MGI SNP Detail
Chr11:113667532fBolt : within coordinates of
Cog1 : 478 bp downstream of
Fam104a : Intron
1SNP CA                                            A/C
rs27017570
MPD | dbSNP | MGI SNP Detail
Chr11:113667641fBolt : within coordinates of
Cog1 : 587 bp downstream of
Fam104a : Intron
2SNPCCCTT    C TTCT      T          T      C     C C/T
rs108531334
MPD | dbSNP | MGI SNP Detail
Chr11:113668058fBolt : within coordinates of
Cog1 : 1004 bp downstream of
Fam104a : Intron
1SNP GA        G                                   A/G
rs108701723
MPD | dbSNP | MGI SNP Detail
Chr11:113668087fBolt : within coordinates of
Cog1 : 1033 bp downstream of
Fam104a : Intron
1SNP TG                                            G/T
rs29412846
MPD | dbSNP | MGI SNP Detail
Chr11:113669006fBolt : within coordinates of
Cog1 : 1952 bp downstream of
Fam104a : Intron
3SNPAAC        A       C             A             A/C
rs29441094
MPD | dbSNP | MGI SNP Detail
Chr11:113669010fBolt : within coordinates of
Cog1 : 1956 bp downstream of
Fam104a : Intron
3SNPCCT        C       T             C             C/T
rs29470976
MPD | dbSNP | MGI SNP Detail
Chr11:113669052fBolt : within coordinates of
Cog1 : 1998 bp downstream of
Fam104a : Intron
2SNPG A        G                                   A/G

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/01/2014
MGI 5.18
The Jackson Laboratory