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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Six5
sine oculis-related homeobox 5
MGI:106220

28 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs8254031
MPD | dbSNP | MGI SNP Detail
Chr7:19092806fDmpk : Intron
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP   TT TT  A T  T    T T               T T       A/T
rs8254032
MPD | dbSNP | MGI SNP Detail
Chr7:19092935fDmpk : Intron
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
3SNP TCCC TC  C C  T  C T C               C T       C/T
rs241906628
MPD | dbSNP | MGI SNP Detail
Chr7:19093147fDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP                 G                A             A/G
rs264281265
MPD | dbSNP | MGI SNP Detail
Chr7:19093192fDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP                 G                C             C/G
rs3023107
MPD | dbSNP | MGI SNP Detail
Chr7:19093396fDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
4SNP CTTTTCC  C T  C TC CTC           T   T C       C/T
rs3023108
MPD | dbSNP | MGI SNP Detail
Chr7:19093410fDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
5SNPAATTTTAATTAATAAATTATATAATAATATTTATTATATTAATTATAAA/T
rs3023109
MPD | dbSNP | MGI SNP Detail
Chr7:19093445fDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP  CCCCCC  T C  C  C CCC               C C       C/T
rs8254036
MPD | dbSNP | MGI SNP Detail
Chr7:19093466rDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP  GGGGGG  G G  G  A GGG               G G       A/G
rs8254035
MPD | dbSNP | MGI SNP Detail
Chr7:19093565rDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP  CCCCCC  C C  C  T CCC               C C       C/T
rs8254034
MPD | dbSNP | MGI SNP Detail
Chr7:19093647rDmpk : mRNA-UTR
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
3SNP AGGGGAG  G G  A  G AGG               G A       A/G
rs8254039
MPD | dbSNP | MGI SNP Detail
Chr7:19093876rDmpk : Locus-Region
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1IN-DEL  CCCC-C  C C  -  C - C               C -       -/C
rs8254038
MPD | dbSNP | MGI SNP Detail
Chr7:19093881rDmpk : Locus-Region
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
3SNP CCCCCCT  C C  C CC C T           C   C C       C/T
rs8254037
MPD | dbSNP | MGI SNP Detail
Chr7:19093900rDmpk : Locus-Region
jrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP  AAAAAA  G A  A  A A A               A A       A/G
rs32518112
MPD | dbSNP | MGI SNP Detail
Chr7:19094452fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
2SNPTTG         G                                   G/T
rs52359579
MPD | dbSNP | MGI SNP Detail
Chr7:19094539fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
1SNP            C                                   C
rs52503298
MPD | dbSNP | MGI SNP Detail
Chr7:19094605fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : mRNA-UTR
2SNP                 G                A             A/G
rs31739626
MPD | dbSNP | MGI SNP Detail
Chr7:19095113fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Coding-Synonymous
2SNP TC         C                                   C/T
rs31741208
MPD | dbSNP | MGI SNP Detail
Chr7:19095227fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Coding-Synonymous
2SNP GC         C                                   C/G
rs31487466
MPD | dbSNP | MGI SNP Detail
Chr7:19095661fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Intron
3SNP GA    G    A    A                A             A/G
rs32030968
MPD | dbSNP | MGI SNP Detail
Chr7:19095666fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Intron
1SNP AC    C    C                                   A/C
rs31936956
MPD | dbSNP | MGI SNP Detail
Chr7:19095718fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Intron
2SNP GA    A    A                                   A/G
rs31028949
MPD | dbSNP | MGI SNP Detail
Chr7:19098622fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
2SNP TC    C    C                                   C/T
rs31774398
MPD | dbSNP | MGI SNP Detail
Chr7:19098664fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : Locus-Region
3SNP TT    C    T    T                T             C/T
rs31916463
MPD | dbSNP | MGI SNP Detail
Chr7:19098874fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : 325 bp downstream of
2SNP AT         T                                   A/T
rs31256200
MPD | dbSNP | MGI SNP Detail
Chr7:19100284fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : 1735 bp downstream of
3SNP TT    C    T    T                T             C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31138992
MPD | dbSNP | MGI SNP Detail
Chr7:19100353fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : 1804 bp downstream of
1SNP C     A    C                                   A/C
rs31986603
MPD | dbSNP | MGI SNP Detail
Chr7:19100354fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : 1805 bp downstream of
1SNP C     A    C                                   A/C
rs32379150
MPD | dbSNP | MGI SNP Detail
Chr7:19100355fjrc : within coordinates of
nmf206 : within coordinates of
repro13 : within coordinates of
Six5 : 1806 bp downstream of
1SNP C     T    C                                   C/T

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory