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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Clcn2
chloride channel 2
MGI:105061

77 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs251281301
MPD | dbSNP | MGI SNP Detail
Chr16:20701068fClcn2 : 1896 bp downstream of
Fam131a : Intron
nmf219 : within coordinates of
1SNP            T  C   C/T
rs221503627
MPD | dbSNP | MGI SNP Detail
Chr16:20701129fClcn2 : 1835 bp downstream of
Fam131a : Intron
nmf219 : within coordinates of
1SNP            G  A   A/G
rs52332217
MPD | dbSNP | MGI SNP Detail
Chr16:20701250fClcn2 : 1714 bp downstream of
Fam131a : Intron
nmf219 : within coordinates of
1SNPG GGGG GGGAG GG GAGA/G
rs51536260
MPD | dbSNP | MGI SNP Detail
Chr16:20701673fClcn2 : 1291 bp downstream of
Fam131a : Coding-NonSynonymous
nmf219 : within coordinates of
1SNPG GGGG GGGGG  G GGAA/G
rs237751880
MPD | dbSNP | MGI SNP Detail
Chr16:20701971fClcn2 : 993 bp downstream of
Fam131a : mRNA-UTR
nmf219 : within coordinates of
1SNP            C  A   A/C
rs4165228
MPD | dbSNP | MGI SNP Detail
Chr16:20702303fClcn2 : 661 bp downstream of
Fam131a : mRNA-UTR
nmf219 : within coordinates of
5SNPAACAAAAAAAA C AAAAAA/C
rs49301776
MPD | dbSNP | MGI SNP Detail
Chr16:20702338fClcn2 : 626 bp downstream of
Fam131a : mRNA-UTR
nmf219 : within coordinates of
1SNPC CCCC CCCTC  C C CC/T
rs46083898
MPD | dbSNP | MGI SNP Detail
Chr16:20702609fClcn2 : Intron
Fam131a : mRNA-UTR
nmf219 : within coordinates of
1SNPG GGGG GGGAG GG GGGA/G
rs46359853
MPD | dbSNP | MGI SNP Detail
Chr16:20702657fClcn2 : Intron
Fam131a : mRNA-UTR
nmf219 : within coordinates of
1SNPT TTTT TTTGT  T TGTG/T
rs49551933
MPD | dbSNP | MGI SNP Detail
Chr16:20703224fClcn2 : mRNA-UTR
Fam131a : Locus-Region
nmf219 : within coordinates of
1SNPC CCCC GCCCC CC CCCC/G
rs51451653
MPD | dbSNP | MGI SNP Detail
Chr16:20703671fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT TTTAT  T TATA/T
rs46445910
MPD | dbSNP | MGI SNP Detail
Chr16:20703781fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TCTC/T
rs50476953
MPD | dbSNP | MGI SNP Detail
Chr16:20703817fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TCTC/T
rs49422281
MPD | dbSNP | MGI SNP Detail
Chr16:20703929fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCCTC  C CTCC/T
rs49442186
MPD | dbSNP | MGI SNP Detail
Chr16:20703982fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTTTT TT TTTC/T
rs50129693
MPD | dbSNP | MGI SNP Detail
Chr16:20704116fClcn2 : Intron
nmf219 : within coordinates of
1SNPG GGGG GGGAG GG GAGA/G
rs51311283
MPD | dbSNP | MGI SNP Detail
Chr16:20704320fClcn2 : Intron
nmf219 : within coordinates of
2SNPG GGGG GGGGG GG GGCC/G
rs51269851
MPD | dbSNP | MGI SNP Detail
Chr16:20704496fClcn2 : Intron
nmf219 : within coordinates of
2SNPT TTTT TTTCT TT TCTC/T
rs50356265
MPD | dbSNP | MGI SNP Detail
Chr16:20704731fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
rs49760970
MPD | dbSNP | MGI SNP Detail
Chr16:20705357fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
rs49839738
MPD | dbSNP | MGI SNP Detail
Chr16:20705405fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT TTTCT TT TTTC/T
rs4165229
MPD | dbSNP | MGI SNP Detail
Chr16:20705537fClcn2 : Intron
nmf219 : within coordinates of
5SNPTTCTTTTCTTCTCTTTTCTC/T
rs47145081
MPD | dbSNP | MGI SNP Detail
Chr16:20705622fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTTTT TT TTTC/T
rs4165230
MPD | dbSNP | MGI SNP Detail
Chr16:20705730fClcn2 : Intron
nmf219 : within coordinates of
4SNP AC   A     C  A   A/C
rs4165231
MPD | dbSNP | MGI SNP Detail
Chr16:20705731fClcn2 : Intron
nmf219 : within coordinates of
4SNP AC   A     C  A   A/C
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs46332031
MPD | dbSNP | MGI SNP Detail
Chr16:20705799fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA  AAC  AA ACAA/C
rs46186377
MPD | dbSNP | MGI SNP Detail
Chr16:20706389fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
rs48187001
MPD | dbSNP | MGI SNP Detail
Chr16:20706501fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCCCC CC CCCC/T
rs48982118
MPD | dbSNP | MGI SNP Detail
Chr16:20707116fClcn2 : Intron
nmf219 : within coordinates of
1SNPG GGGG GGGGG GG GAGA/G
rs229534149
MPD | dbSNP | MGI SNP Detail
Chr16:20707386fClcn2 : Intron
nmf219 : within coordinates of
1SNP            G  A   A/G
rs48843812
MPD | dbSNP | MGI SNP Detail
Chr16:20707621fClcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TCTC/T
rs46564787
MPD | dbSNP | MGI SNP Detail
Chr16:20708174fClcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPC CCCC CCCTC CC CTCC/T
rs46981144
MPD | dbSNP | MGI SNP Detail
Chr16:20708233fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCCCC CC CCCC/T
rs46792779
MPD | dbSNP | MGI SNP Detail
Chr16:20708353fClcn2 : Coding-NonSynonymous
Clcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPG GGGG TGGTG GG GTGG/T
rs46491930
MPD | dbSNP | MGI SNP Detail
Chr16:20708523fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCCTC CC CCCC/T
rs51691970
MPD | dbSNP | MGI SNP Detail
Chr16:20708795fClcn2 : Intron
nmf219 : within coordinates of
1SNPG GGGG AGGG  GG GGGA/G
rs47689183
MPD | dbSNP | MGI SNP Detail
Chr16:20709000fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC GCCCC CC CCCC/G
rs51347379
MPD | dbSNP | MGI SNP Detail
Chr16:20709173fClcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPT TTTT GTTTT TT TTTG/T
rs47588360
MPD | dbSNP | MGI SNP Detail
Chr16:20709466fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC CCCGC CC CGCC/G
rs50130509
MPD | dbSNP | MGI SNP Detail
Chr16:20709571fClcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPG GGGG AGGAG GG GAGA/G
rs52244113
MPD | dbSNP | MGI SNP Detail
Chr16:20709676fClcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPC CCCC CCCTC CC CTCC/T
rs46015917
MPD | dbSNP | MGI SNP Detail
Chr16:20710185fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCCCC CC  CCC/T
rs46808471
MPD | dbSNP | MGI SNP Detail
Chr16:20710243fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
rs48232384
MPD | dbSNP | MGI SNP Detail
Chr16:20710489fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC CCCTC CC CTCC/T
rs48634983
MPD | dbSNP | MGI SNP Detail
Chr16:20710702fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCCCC CC CCCC/T
rs49527758
MPD | dbSNP | MGI SNP Detail
Chr16:20710715fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT GTTTT TT TTTG/T
rs49337863
MPD | dbSNP | MGI SNP Detail
Chr16:20710748fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TCTC/T
rs47013859
MPD | dbSNP | MGI SNP Detail
Chr16:20710778fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT GTTGT TT TGTG/T
rs246893470
MPD | dbSNP | MGI SNP Detail
Chr16:20710803fClcn2 : Intron
nmf219 : within coordinates of
1SNP            G  A   A/G
rs51189479
MPD | dbSNP | MGI SNP Detail
Chr16:20711192fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47223857
MPD | dbSNP | MGI SNP Detail
Chr16:20711203fClcn2 : Intron
nmf219 : within coordinates of
1SNPG GGGG CGG G GG GCGC/G
rs46112537
MPD | dbSNP | MGI SNP Detail
Chr16:20711439fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC TCC C CC C CC/T
rs47131109
MPD | dbSNP | MGI SNP Detail
Chr16:20711444fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC CCCT  CC CTCC/T
rs49639820
MPD | dbSNP | MGI SNP Detail
Chr16:20711595fClcn2 : Intron
nmf219 : within coordinates of
1SNPG GGGG AGGAG GG GAGA/G
rs4165232
MPD | dbSNP | MGI SNP Detail
Chr16:20711981fClcn2 : Intron
nmf219 : within coordinates of
4SNP CT   C C   T  C   C/T
rs49895698
MPD | dbSNP | MGI SNP Detail
Chr16:20712316fClcn2 : Coding-NonSynonymous
Clcn2 : Coding-Synonymous
nmf219 : within coordinates of
1SNPG GGGG TGGTG GG GTGG/T
rs46629257
MPD | dbSNP | MGI SNP Detail
Chr16:20712814fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA  AAAA AA AGAA/G
rs46937044
MPD | dbSNP | MGI SNP Detail
Chr16:20713167fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTT T TT TCTC/T
rs49192492
MPD | dbSNP | MGI SNP Detail
Chr16:20713780fClcn2 : Intron
nmf219 : within coordinates of
1SNPG GGGG GGGAG GG GAGA/G
rs4165233
MPD | dbSNP | MGI SNP Detail
Chr16:20714091fClcn2 : Intron
nmf219 : within coordinates of
4SNPTTC   T     C  T   C/T
rs46332904
MPD | dbSNP | MGI SNP Detail
Chr16:20714422fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC CCCCC CC CTCC/T
rs51889075
MPD | dbSNP | MGI SNP Detail
Chr16:20715121fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC CCCAC CC CACA/C
rs46270537
MPD | dbSNP | MGI SNP Detail
Chr16:20715356fClcn2 : Intron
nmf219 : within coordinates of
1SNPC CCCC CCCTC CC CTCC/T
rs50872469
MPD | dbSNP | MGI SNP Detail
Chr16:20715409fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTT T TT TCTC/T
rs47574568
MPD | dbSNP | MGI SNP Detail
Chr16:20715432fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT TTTGT TT TGTG/T
rs48067785
MPD | dbSNP | MGI SNP Detail
Chr16:20715493fClcn2 : Intron
nmf219 : within coordinates of
1SNPT TTTT CTTT  TT TTTC/T
rs4165234
MPD | dbSNP | MGI SNP Detail
Chr16:20715507fClcn2 : Intron
nmf219 : within coordinates of
5SNPCCTCCCCTCCTCTCCCCTCC/T
rs49353767
MPD | dbSNP | MGI SNP Detail
Chr16:20715622fClcn2 : Intron
nmf219 : within coordinates of
1SNPA AAAA  AAGA AA AGAA/G
rs4165235
MPD | dbSNP | MGI SNP Detail
Chr16:20715734fClcn2 : Intron
nmf219 : within coordinates of
4SNP CT   C C   T  C   C/T
rs4165236
MPD | dbSNP | MGI SNP Detail
Chr16:20715938fClcn2 : Coding-NonSynonymous
nmf219 : within coordinates of
Polr2h : Locus-Region
4SNPG A   G G   A  G   A/G
rs249732187
MPD | dbSNP | MGI SNP Detail
Chr16:20716587fClcn2 : mRNA-UTR
nmf219 : within coordinates of
Polr2h : Locus-Region
1SNP            A  C   A/C
rs4165237
MPD | dbSNP | MGI SNP Detail
Chr16:20717661fClcn2 : Locus-Region
nmf219 : within coordinates of
Polr2h : Locus-Region
4SNP AG   A A   G  A   A/G
rs4165238
MPD | dbSNP | MGI SNP Detail
Chr16:20718563fClcn2 : Locus-Region
nmf219 : within coordinates of
Polr2h : Intron
4SNP CA   C     A  C   A/C
rs4165239
MPD | dbSNP | MGI SNP Detail
Chr16:20718595fClcn2 : Locus-Region
nmf219 : within coordinates of
Polr2h : Intron
3SNPTTA   T     A  T   A/T
rs47207046
MPD | dbSNP | MGI SNP Detail
Chr16:20719010fClcn2 : 1264 bp upstream of
nmf219 : within coordinates of
Polr2h : Coding-Synonymous
1SNP  T T  CT     T    C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs4165240
MPD | dbSNP | MGI SNP Detail
Chr16:20719497fClcn2 : 1751 bp upstream of
nmf219 : within coordinates of
Polr2h : Intron
4SNP  A   G G   A  G   A/G
rs4165241
MPD | dbSNP | MGI SNP Detail
Chr16:20719634fClcn2 : 1888 bp upstream of
nmf219 : within coordinates of
Polr2h : Intron
4SNP AG   A A   G  A   A/G

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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory