|
Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
|
Symbol Name ID |
Cldn1 claudin 1 MGI:1276109 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs32489331 MPD | dbSNP | MGI SNP Detail | Chr16:26363332 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | C | G | C/G | ||
| rs32489332 MPD | dbSNP | MGI SNP Detail | Chr16:26363472 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||
| rs32490274 MPD | dbSNP | MGI SNP Detail | Chr16:26363485 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||
| rs32490276 MPD | dbSNP | MGI SNP Detail | Chr16:26363676 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||
| rs32490278 MPD | dbSNP | MGI SNP Detail | Chr16:26363906 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | C/T | |||
| rs32490280 MPD | dbSNP | MGI SNP Detail | Chr16:26364010 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | C | A | A | A | A | A | A/C | |||
| rs32490282 MPD | dbSNP | MGI SNP Detail | Chr16:26364263 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | A | A/C | ||||
| rs32491184 MPD | dbSNP | MGI SNP Detail | Chr16:26364392 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | A | A/G | ||
| rs32491186 MPD | dbSNP | MGI SNP Detail | Chr16:26364506 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | A/G | |||
| rs32491188 MPD | dbSNP | MGI SNP Detail | Chr16:26364748 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | A | C | C | C | C | A | C | A/C | ||
| rs32491190 MPD | dbSNP | MGI SNP Detail | Chr16:26364837 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||
| rs32491192 MPD | dbSNP | MGI SNP Detail | Chr16:26364956 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs32492064 MPD | dbSNP | MGI SNP Detail | Chr16:26365049 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||||
| rs32492066 MPD | dbSNP | MGI SNP Detail | Chr16:26365127 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | C/T | |||
| rs32492068 MPD | dbSNP | MGI SNP Detail | Chr16:26365202 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | T | G | G | G | G | T | G | G/T | ||
| rs32492069 MPD | dbSNP | MGI SNP Detail | Chr16:26365251 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A/G | |||
| rs32492070 MPD | dbSNP | MGI SNP Detail | Chr16:26365678 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | A | G | A/G | |||
| rs4165488 MPD | dbSNP | MGI SNP Detail | Chr16:26365799 | f | Cldn1 : Intron | 2 | SNP | A | G | A | A | A | A/G | ||||||||||||
| rs32492072 MPD | dbSNP | MGI SNP Detail | Chr16:26365866 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | C | C | A/C | ||
| rs32492073 MPD | dbSNP | MGI SNP Detail | Chr16:26365923 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | T | C/T | ||
| rs32493354 MPD | dbSNP | MGI SNP Detail | Chr16:26366075 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | ||||
| rs32493356 MPD | dbSNP | MGI SNP Detail | Chr16:26366315 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | A | A/G | ||
| rs32493358 MPD | dbSNP | MGI SNP Detail | Chr16:26366364 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | G | A/G | ||
| rs32493360 MPD | dbSNP | MGI SNP Detail | Chr16:26366409 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | C | C | C | C | A | C | A/C | |||
| rs32493362 MPD | dbSNP | MGI SNP Detail | Chr16:26366503 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C/T | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs32494034 MPD | dbSNP | MGI SNP Detail | Chr16:26366546 | f | Cldn1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | ||
| rs32494036 MPD | dbSNP | MGI SNP Detail | Chr16:26366658 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C/T | |||
| rs32494038 MPD | dbSNP | MGI SNP Detail | Chr16:26366883 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | C/T | |||
| rs32494040 MPD | dbSNP | MGI SNP Detail | Chr16:26366884 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | C | C | G | C | C | C | C | G | C | C/G | |||
| rs32494042 MPD | dbSNP | MGI SNP Detail | Chr16:26367580 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | |||
| rs32486514 MPD | dbSNP | MGI SNP Detail | Chr16:26367713 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||
| rs32486516 MPD | dbSNP | MGI SNP Detail | Chr16:26367953 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||
| rs32486517 MPD | dbSNP | MGI SNP Detail | Chr16:26368001 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | C/T | |||||||||||
| rs32486519 MPD | dbSNP | MGI SNP Detail | Chr16:26368713 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs32486520 MPD | dbSNP | MGI SNP Detail | Chr16:26369063 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | C/T | |||
| rs32486521 MPD | dbSNP | MGI SNP Detail | Chr16:26369153 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | C/T | |||
| rs32486523 MPD | dbSNP | MGI SNP Detail | Chr16:26369265 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs32487555 MPD | dbSNP | MGI SNP Detail | Chr16:26369325 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | ||
| rs32487557 MPD | dbSNP | MGI SNP Detail | Chr16:26369475 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | T | C/T | ||
| rs32487559 MPD | dbSNP | MGI SNP Detail | Chr16:26369709 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | G | A | A/G | |||||
| rs32487561 MPD | dbSNP | MGI SNP Detail | Chr16:26369777 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | C | A | C | A | A | A | A | A | A/C | |||||
| rs32487563 MPD | dbSNP | MGI SNP Detail | Chr16:26370235 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | C | T | C | T | T | T | C | C/T | ||||||
| rs32488505 MPD | dbSNP | MGI SNP Detail | Chr16:26370346 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A/C | ||
| rs32488507 MPD | dbSNP | MGI SNP Detail | Chr16:26370724 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||
| rs32488509 MPD | dbSNP | MGI SNP Detail | Chr16:26370782 | f | Cldn1 : Intron | 1 | SNP | A | A | A | G | A | G | A | A | A | A | A | A/G | ||||||
| rs32488511 MPD | dbSNP | MGI SNP Detail | Chr16:26370917 | f | Cldn1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||
| rs32488513 MPD | dbSNP | MGI SNP Detail | Chr16:26371120 | f | Cldn1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||
| rs32489425 MPD | dbSNP | MGI SNP Detail | Chr16:26371154 | f | Cldn1 : Intron | 1 | SNP | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||||
| rs32489427 MPD | dbSNP | MGI SNP Detail | Chr16:26371341 | f | Cldn1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs32489429 MPD | dbSNP | MGI SNP Detail | Chr16:26371779 | f | Cldn1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | T | C/T | |||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs32489431 MPD | dbSNP | MGI SNP Detail | Chr16:26371824 | f | Cldn1 : mRNA-UTR | 1 | SNP | T | T | T | T | T | G | T | T | G | T | T | T | T | G | T | G/T | ||
| rs32489433 MPD | dbSNP | MGI SNP Detail | Chr16:26371928 | f | Cldn1 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | G | A/G | ||
| rs32490175 MPD | dbSNP | MGI SNP Detail | Chr16:26371939 | f | Cldn1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | G | C | C/G | |||
| rs32490177 MPD | dbSNP | MGI SNP Detail | Chr16:26372038 | f | Cldn1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G/T | |||
| rs32490179 MPD | dbSNP | MGI SNP Detail | Chr16:26372178 | f | Cldn1 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | A | G | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
||
|
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support. |
last database update 05/08/2013 MGI 5.13 |
|
|
|
||
Analysis Tools