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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Cldn1
claudin 1
MGI:1276109

94 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs247989488
MPD | dbSNP | MGI SNP Detail
Chr16:26357728fCldn1 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs266242954
MPD | dbSNP | MGI SNP Detail
Chr16:26359583fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            T  A   A/T
rs233598402
MPD | dbSNP | MGI SNP Detail
Chr16:26360662fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            G  A   A/G
rs32489331
MPD | dbSNP | MGI SNP Detail
Chr16:26363246fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG CGGCG GG GCGC/G
rs32489332
MPD | dbSNP | MGI SNP Detail
Chr16:26363386fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG GGGGG GG GAGA/G
rs32490274
MPD | dbSNP | MGI SNP Detail
Chr16:26363399fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC TCCTC CC CCCC/T
rs32490276
MPD | dbSNP | MGI SNP Detail
Chr16:26363590fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TCTC/T
rs32490278
MPD | dbSNP | MGI SNP Detail
Chr16:26363820fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TT C/T
rs32490280
MPD | dbSNP | MGI SNP Detail
Chr16:26363924fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA CAACA AA A AA/C
rs32490282
MPD | dbSNP | MGI SNP Detail
Chr16:26364177fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPC CCCC ACCACAC CCA A/C
rs32491184
MPD | dbSNP | MGI SNP Detail
Chr16:26364306fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AAAA/G
rs259545717
MPD | dbSNP | MGI SNP Detail
Chr16:26364363fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            G  A   A/G
rs32491186
MPD | dbSNP | MGI SNP Detail
Chr16:26364420fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AA A/G
rs32491188
MPD | dbSNP | MGI SNP Detail
Chr16:26364662fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC CCCAC CC CACA/C
rs32491190
MPD | dbSNP | MGI SNP Detail
Chr16:26364751fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC CCCCC CC CTCC/T
rs32491192
MPD | dbSNP | MGI SNP Detail
Chr16:26364870fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
rs32492064
MPD | dbSNP | MGI SNP Detail
Chr16:26364963fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG  GG G GG GAGA/G
rs32492066
MPD | dbSNP | MGI SNP Detail
Chr16:26365041fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTT T TT TTTC/T
rs32492068
MPD | dbSNP | MGI SNP Detail
Chr16:26365116fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG TGGTG GG GTGG/T
rs32492069
MPD | dbSNP | MGI SNP Detail
Chr16:26365165fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AG A/G
rs32492070
MPD | dbSNP | MGI SNP Detail
Chr16:26365592fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG AGGA  GG GAGA/G
rs4165488
MPD | dbSNP | MGI SNP Detail
Chr16:26365713fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
3SNPAGA   A A          A/G
rs32492072
MPD | dbSNP | MGI SNP Detail
Chr16:26365780fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC ACCAC CC CCCA/C
rs32492073
MPD | dbSNP | MGI SNP Detail
Chr16:26365837fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT CTTCTCTTTTTTC/T
rs245496010
MPD | dbSNP | MGI SNP Detail
Chr16:26365874fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  T   A/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs211965945
MPD | dbSNP | MGI SNP Detail
Chr16:26365876fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  T   A/T
rs229055535
MPD | dbSNP | MGI SNP Detail
Chr16:26365912fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            C  T   C/T
rs32493354
MPD | dbSNP | MGI SNP Detail
Chr16:26365989fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC  CCTC CC C CC/T
rs253936076
MPD | dbSNP | MGI SNP Detail
Chr16:26366095fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs32493356
MPD | dbSNP | MGI SNP Detail
Chr16:26366229fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AAAA/G
rs32493358
MPD | dbSNP | MGI SNP Detail
Chr16:26366278fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPG GGGG AGGAGAGGGGGGA/G
rs32493360
MPD | dbSNP | MGI SNP Detail
Chr16:26366323fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPC CCCC ACC CACCCCACA/C
rs32493362
MPD | dbSNP | MGI SNP Detail
Chr16:26366417fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT T  C/T
rs32494034
MPD | dbSNP | MGI SNP Detail
Chr16:26366460fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG AGGAG GG GAGA/G
rs32494036
MPD | dbSNP | MGI SNP Detail
Chr16:26366572fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TC C/T
rs32494038
MPD | dbSNP | MGI SNP Detail
Chr16:26366797fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT CTTCTCTTTT TC/T
rs32494040
MPD | dbSNP | MGI SNP Detail
Chr16:26366798fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC  CCGC CC CGCC/G
rs32494042
MPD | dbSNP | MGI SNP Detail
Chr16:26367494fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC C CC CCCCC CC CTCC/T
rs32486514
MPD | dbSNP | MGI SNP Detail
Chr16:26367627fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC TCCTC CC CCCC/T
rs32486516
MPD | dbSNP | MGI SNP Detail
Chr16:26367867fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC TCCTC CC CCCC/T
rs32486517
MPD | dbSNP | MGI SNP Detail
Chr16:26367915fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT   T   TT  C  TTC C/T
rs32486519
MPD | dbSNP | MGI SNP Detail
Chr16:26368627fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPA AAAA GAAGAGAAAAGAA/G
rs32486520
MPD | dbSNP | MGI SNP Detail
Chr16:26368977fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TT C/T
rs32486521
MPD | dbSNP | MGI SNP Detail
Chr16:26369067fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTT T TT TTTC/T
rs32486523
MPD | dbSNP | MGI SNP Detail
Chr16:26369179fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA GAAGA AA AGAA/G
rs32487555
MPD | dbSNP | MGI SNP Detail
Chr16:26369239fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT TTTTT TT TCTC/T
rs32487557
MPD | dbSNP | MGI SNP Detail
Chr16:26369389fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TTTC/T
rs32487559
MPD | dbSNP | MGI SNP Detail
Chr16:26369623fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA   AA  AAGA AA AGAA/G
rs32487561
MPD | dbSNP | MGI SNP Detail
Chr16:26369691fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAA  C ACA AA AA A/C
rs261018439
MPD | dbSNP | MGI SNP Detail
Chr16:26370112fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32487563
MPD | dbSNP | MGI SNP Detail
Chr16:26370149fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT  TTT CT C  TT TC C/T
rs222051219
MPD | dbSNP | MGI SNP Detail
Chr16:26370175fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs32488505
MPD | dbSNP | MGI SNP Detail
Chr16:26370260fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA AAAA AAAAA AA ACAA/C
rs32488507
MPD | dbSNP | MGI SNP Detail
Chr16:26370638fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPA AAAA AAAGAGAAAAGAA/G
rs32488509
MPD | dbSNP | MGI SNP Detail
Chr16:26370696fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA   AA G AGA AA AA A/G
rs261070198
MPD | dbSNP | MGI SNP Detail
Chr16:26370756fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            T  C   C/T
rs221386129
MPD | dbSNP | MGI SNP Detail
Chr16:26370828fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            T  C   C/T
rs32488511
MPD | dbSNP | MGI SNP Detail
Chr16:26370831fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC TCCTC CC CCCC/T
rs241577406
MPD | dbSNP | MGI SNP Detail
Chr16:26370864fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs259609881
MPD | dbSNP | MGI SNP Detail
Chr16:26370929fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs225414755
MPD | dbSNP | MGI SNP Detail
Chr16:26371033fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            C  T   C/T
rs32488513
MPD | dbSNP | MGI SNP Detail
Chr16:26371034fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT CTTCTCTTTTCTC/T
rs32489425
MPD | dbSNP | MGI SNP Detail
Chr16:26371068fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC   CC TCCTC CC CCCC/T
rs264544429
MPD | dbSNP | MGI SNP Detail
Chr16:26371086fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            T  C   C/T
rs228650621
MPD | dbSNP | MGI SNP Detail
Chr16:26371224fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            C  T   C/T
rs259115426
MPD | dbSNP | MGI SNP Detail
Chr16:26371233fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            C  A   A/C
rs32489427
MPD | dbSNP | MGI SNP Detail
Chr16:26371255fCldn1 : Intron
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPA AAAA GAAGAGAAAAGAA/G
rs226837719
MPD | dbSNP | MGI SNP Detail
Chr16:26371423fCldn1 : Coding-Synonymous
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs32489429
MPD | dbSNP | MGI SNP Detail
Chr16:26371693fCldn1 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC   C  CC    CC CT C/T
rs32489431
MPD | dbSNP | MGI SNP Detail
Chr16:26371738fCldn1 : mRNA-UTR
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT GTTGTGTTTTGTG/T
rs32489433
MPD | dbSNP | MGI SNP Detail
Chr16:26371842fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG AGGAG GG GGGA/G
rs32490175
MPD | dbSNP | MGI SNP Detail
Chr16:26371853fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC CCCC  CC CGCC/G
rs32490177
MPD | dbSNP | MGI SNP Detail
Chr16:26371952fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG GGG G GG GTGG/T
rs32490179
MPD | dbSNP | MGI SNP Detail
Chr16:26372092fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG AGGA  G  GAGA/G
rs32490181
MPD | dbSNP | MGI SNP Detail
Chr16:26372393fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT ATTATATTTTATA/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs232200401
MPD | dbSNP | MGI SNP Detail
Chr16:26372415fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  T   A/T
rs32490183
MPD | dbSNP | MGI SNP Detail
Chr16:26372504fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC CCCTC CC CTCC/T
rs32491085
MPD | dbSNP | MGI SNP Detail
Chr16:26372721fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPA   A   AA      AG A/G
rs255702190
MPD | dbSNP | MGI SNP Detail
Chr16:26372804fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs32491087
MPD | dbSNP | MGI SNP Detail
Chr16:26372863fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPT TTTT CTTCT TT TC C/T
rs32491089
MPD | dbSNP | MGI SNP Detail
Chr16:26372958fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPG GGGG GGGGG GG GAGA/G
rs213479988
MPD | dbSNP | MGI SNP Detail
Chr16:26373065fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs239624339
MPD | dbSNP | MGI SNP Detail
Chr16:26373238fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            C  T   C/T
rs264384807
MPD | dbSNP | MGI SNP Detail
Chr16:26373368fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            G  A   A/G
rs32491090
MPD | dbSNP | MGI SNP Detail
Chr16:26373395fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT CTTCTCTTTTTTC/T
rs235206786
MPD | dbSNP | MGI SNP Detail
Chr16:26373445fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            T  C   C/T
rs32491091
MPD | dbSNP | MGI SNP Detail
Chr16:26373498fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPC CCCC ACCACACCCCACA/C
rs32491093
MPD | dbSNP | MGI SNP Detail
Chr16:26373543fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNPC CCCC CCCCC CC CTCC/T
rs219325476
MPD | dbSNP | MGI SNP Detail
Chr16:26373581fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            T  G   G/T
rs32492124
MPD | dbSNP | MGI SNP Detail
Chr16:26373628fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPA AAAA GAAGAGAAAAG A/G
rs261221321
MPD | dbSNP | MGI SNP Detail
Chr16:26373654fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            G  T   G/T
rs220799563
MPD | dbSNP | MGI SNP Detail
Chr16:26373718fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            G  A   A/G
rs247077645
MPD | dbSNP | MGI SNP Detail
Chr16:26373743fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
1SNP            A  G   A/G
rs32492126
MPD | dbSNP | MGI SNP Detail
Chr16:26373785fCldn1 : Locus-Region
Loh2 : within coordinates of
nmf219 : within coordinates of
2SNPT TTTT CTTCTCTTTTTTC/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory