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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Epha2
Eph receptor A2
MGI:95278

133 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32665473
MPD | dbSNP | MGI SNP Detail
Chr4:140855419fEpha2 : Locus-Region1SNP AG   G    A                                            A/G
rs32710533
MPD | dbSNP | MGI SNP Detail
Chr4:140855473fEpha2 : Locus-Region1SNP TT   T    C                                            C/T
rs32523271
MPD | dbSNP | MGI SNP Detail
Chr4:140855510fEpha2 : Locus-Region1SNP TT   T    C                                            C/T
rs32232629
MPD | dbSNP | MGI SNP Detail
Chr4:140855661fEpha2 : Locus-Region1SNP TC   C                                                 C/T
rs31875915
MPD | dbSNP | MGI SNP Detail
Chr4:140855667fEpha2 : Locus-Region1SNP TC   C                                                 C/T
rs31835071
MPD | dbSNP | MGI SNP Detail
Chr4:140856405fEpha2 : Locus-Region1SNP GG        T                                            G/T
rs27556254
MPD | dbSNP | MGI SNP Detail
Chr4:140857295fEpha2 : Coding-Synonymous1SNPC CCCC       T            C                    C        C/T
rs27556253
MPD | dbSNP | MGI SNP Detail
Chr4:140857448fEpha2 : Intron2SNPTTCCCCC    C C            T                    C C      C/T
rs32706338
MPD | dbSNP | MGI SNP Detail
Chr4:140857690fEpha2 : Intron1SNP A    A    T                                            A/T
rs27556252
MPD | dbSNP | MGI SNP Detail
Chr4:140858310fEpha2 : Intron1SNPA AAAA       T            A                    A        A/T
rs32558395
MPD | dbSNP | MGI SNP Detail
Chr4:140858729fEpha2 : Intron1SNP TT   T    C                                            C/T
rs32662580
MPD | dbSNP | MGI SNP Detail
Chr4:140858826fEpha2 : Intron1SNP TT   T    C                                            C/T
rs32842154
MPD | dbSNP | MGI SNP Detail
Chr4:140858989fEpha2 : Intron1SNP  A   A    G                                            A/G
rs27556251
MPD | dbSNP | MGI SNP Detail
Chr4:140859123fEpha2 : Intron1SNPG CCCC       C            G                    C        C/G
rs27556250
MPD | dbSNP | MGI SNP Detail
Chr4:140859737fEpha2 : Intron1SNPT CCCC       C            T                    C        C/T
rs27556249
MPD | dbSNP | MGI SNP Detail
Chr4:140859893fEpha2 : Intron1SNPC TTTT       T            C                    T        C/T
rs27556248
MPD | dbSNP | MGI SNP Detail
Chr4:140859933fEpha2 : Intron1SNP   GGG       G            C                    G        C/G
rs32862823
MPD | dbSNP | MGI SNP Detail
Chr4:140860877fEpha2 : Intron1SNP TC   C    T                                            C/T
rs27556247
MPD | dbSNP | MGI SNP Detail
Chr4:140860932fEpha2 : Intron2SNP AGGGGG  G G G            A                    G        A/G
rs33007448
MPD | dbSNP | MGI SNP Detail
Chr4:140860955fEpha2 : Intron1SNP GT   T    T                                            G/T
rs32540896
MPD | dbSNP | MGI SNP Detail
Chr4:140860964fEpha2 : Intron1SNP GG   G    A                                            A/G
rs32855248
MPD | dbSNP | MGI SNP Detail
Chr4:140861230fEpha2 : Intron1SNP  C   C    T                                            C/T
rs27556246
MPD | dbSNP | MGI SNP Detail
Chr4:140861668fEpha2 : Intron1SNPT CCCC       C            T                    C        C/T
rs27556245
MPD | dbSNP | MGI SNP Detail
Chr4:140862639fEpha2 : Intron1SNPA GGGG       G            A                    G        A/G
rs27556244
MPD | dbSNP | MGI SNP Detail
Chr4:140862663fEpha2 : Intron1SNPA GGGG       G            A                    G        A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27556243
MPD | dbSNP | MGI SNP Detail
Chr4:140862712fEpha2 : Intron1SNPG AAAA       A            G                    A        A/G
rs27556242
MPD | dbSNP | MGI SNP Detail
Chr4:140863756fEpha2 : Intron1SNPA GGGG       G            A                    G        A/G
rs27556241
MPD | dbSNP | MGI SNP Detail
Chr4:140863798fEpha2 : Intron1SNPC TTTT     C T            C                    T C      C/T
rs27556240
MPD | dbSNP | MGI SNP Detail
Chr4:140863886fEpha2 : Intron1SNPG AAAA     G A            G                    A        A/G
rs27556239
MPD | dbSNP | MGI SNP Detail
Chr4:140864042fEpha2 : Intron1SNPT CCCC     T C            T                    C        C/T
rs32826037
MPD | dbSNP | MGI SNP Detail
Chr4:140864823fEpha2 : Coding-Synonymous1SNP TC   C    T                                            C/T
rs32507736
MPD | dbSNP | MGI SNP Detail
Chr4:140865007fEpha2 : Intron1SNP CT   T    C                                            C/T
rs32575768
MPD | dbSNP | MGI SNP Detail
Chr4:140865018fEpha2 : Intron1SNP CT   T    C                                            C/T
rs32752005
MPD | dbSNP | MGI SNP Detail
Chr4:140865192fEpha2 : Intron1SNPT C   C    T                                            C/T
rs32229509
MPD | dbSNP | MGI SNP Detail
Chr4:140866809fEpha2 : Intron1SNPC A   A    C                                            A/C
rs32670499
MPD | dbSNP | MGI SNP Detail
Chr4:140866844fEpha2 : Intron1SNPC T   T    C                                            C/T
rs32391373
MPD | dbSNP | MGI SNP Detail
Chr4:140866867fEpha2 : Intron1SNPA A   A    G                                            A/G
rs32892571
MPD | dbSNP | MGI SNP Detail
Chr4:140866868fEpha2 : Intron1SNPT C   C    C                                            C/T
rs32150306
MPD | dbSNP | MGI SNP Detail
Chr4:140867144fEpha2 : Intron1SNPGGA   A    G                                            A/G
rs32644506
MPD | dbSNP | MGI SNP Detail
Chr4:140867390fEpha2 : Intron1SNPCCT   T    C                                            C/T
rs32014281
MPD | dbSNP | MGI SNP Detail
Chr4:140867445fEpha2 : Intron1SNPGG         T                                            G/T
rs32566326
MPD | dbSNP | MGI SNP Detail
Chr4:140867568fEpha2 : Intron1SNPC     T    C                                            C/T
rs32398018
MPD | dbSNP | MGI SNP Detail
Chr4:140868654fEpha2 : Intron1SNPCCT   T    C                                            C/T
rs31832077
MPD | dbSNP | MGI SNP Detail
Chr4:140868702fEpha2 : Intron1SNPCCG   G    C                                            C/G
rs32623169
MPD | dbSNP | MGI SNP Detail
Chr4:140868745fEpha2 : Intron1SNPGGA   A    G                                            A/G
rs32970104
MPD | dbSNP | MGI SNP Detail
Chr4:140869224fEpha2 : Intron1SNP TC   C    T                                            C/T
rs32818234
MPD | dbSNP | MGI SNP Detail
Chr4:140869233fEpha2 : Intron1SNP GC   C    G                                            C/G
rs31970135
MPD | dbSNP | MGI SNP Detail
Chr4:140869820fEpha2 : Intron1SNPC T        C                                            C/T
rs31856335
MPD | dbSNP | MGI SNP Detail
Chr4:140870219fEpha2 : Intron1SNPT C   C    T                                            C/T
rs33024216
MPD | dbSNP | MGI SNP Detail
Chr4:140870354fEpha2 : Intron1SNPG G   G    A                                            A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32676737
MPD | dbSNP | MGI SNP Detail
Chr4:140870446fEpha2 : Intron1SNPG A   A    G                                            A/G
rs32534600
MPD | dbSNP | MGI SNP Detail
Chr4:140870486fEpha2 : Intron1SNPC T   T    C                                            C/T
rs32061840
MPD | dbSNP | MGI SNP Detail
Chr4:140870596fEpha2 : Intron1SNPT T   T    G                                            G/T
rs27556238
MPD | dbSNP | MGI SNP Detail
Chr4:140871316fEpha2 : Intron1SNPA           G G           A             G        G    G A/G
rs27556237
MPD | dbSNP | MGI SNP Detail
Chr4:140874764fEpha2 : Intron1SNPT          GG G           T             G        G    G G/T
rs32817168
MPD | dbSNP | MGI SNP Detail
Chr4:140875792fEpha2 : Intron1SNP TC        T                                            C/T
rs32302370
MPD | dbSNP | MGI SNP Detail
Chr4:140875794fEpha2 : Intron1SNP TA        T                                            A/T
rs32626113
MPD | dbSNP | MGI SNP Detail
Chr4:140875912fEpha2 : Intron1SNP TC        T                                            C/T
rs27556236
MPD | dbSNP | MGI SNP Detail
Chr4:140876291fEpha2 : Intron1SNPC TTTT      CTC                         C      T C      C/T
rs27556235
MPD | dbSNP | MGI SNP Detail
Chr4:140876311fEpha2 : Intron1SNPT CCCC     TTCT           T             T      C T    T C/T
rs27556234
MPD | dbSNP | MGI SNP Detail
Chr4:140876464fEpha2 : Coding-Synonymous1SNPT TTTT   C TTTT           T             T      T T    T C/T
rs27556233
MPD | dbSNP | MGI SNP Detail
Chr4:140876523fEpha2 : Intron1SNPC CCCC   T CCCC           C             C      C C    C C/T
rs27556232
MPD | dbSNP | MGI SNP Detail
Chr4:140876789fEpha2 : Intron1SNPG AAAA   A GGAG           G             G      A G    G A/G
rs27556231
MPD | dbSNP | MGI SNP Detail
Chr4:140876853fEpha2 : Intron1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs27556230
MPD | dbSNP | MGI SNP Detail
Chr4:140876964fEpha2 : Intron1SNPC CCCC   T CCCC           C             C      C C    C C/T
rs27556229
MPD | dbSNP | MGI SNP Detail
Chr4:140877071fEpha2 : Intron1SNPA GGGG   G A GA           A             A      G        A/G
rs27556228
MPD | dbSNP | MGI SNP Detail
Chr4:140877081fEpha2 : Intron1SNP  GGGG   G C G            C                    G      C C/G
rs27556227
MPD | dbSNP | MGI SNP Detail
Chr4:140877097fEpha2 : Intron1SNPC TTTT     CCTC           C             C      T C    C C/T
rs27556226
MPD | dbSNP | MGI SNP Detail
Chr4:140877203fEpha2 : Intron1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs27556225
MPD | dbSNP | MGI SNP Detail
Chr4:140877306fEpha2 : Intron1SNPC TTTT   C CCTC           C             C      T C    C C/T
rs27556224
MPD | dbSNP | MGI SNP Detail
Chr4:140877340fEpha2 : Intron1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs27556223
MPD | dbSNP | MGI SNP Detail
Chr4:140877365fEpha2 : Intron1SNPC TTTT   C  CT            C                    T      C C/T
rs27556222
MPD | dbSNP | MGI SNP Detail
Chr4:140877554fEpha2 : Intron2SNPAAGGGG   G AAGA           A             A      G A    A A/G
rs27556221
MPD | dbSNP | MGI SNP Detail
Chr4:140877572fEpha2 : Intron2SNPCCTTTT   C CCTC           C             C      T C    C C/T
rs27556220
MPD | dbSNP | MGI SNP Detail
Chr4:140877741fEpha2 : Coding-Synonymous1SNPG GGGG   A GGGG           G             G      G G    G A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27556219
MPD | dbSNP | MGI SNP Detail
Chr4:140877762fEpha2 : Coding-Synonymous1SNPT TTTT   C TTTT           T             T      T T    T C/T
rs27556218
MPD | dbSNP | MGI SNP Detail
Chr4:140877994fEpha2 : Coding-Synonymous1SNPT TTTT   C TTTT           T             T      T T    T C/T
rs27556217
MPD | dbSNP | MGI SNP Detail
Chr4:140878138fEpha2 : Coding-Synonymous1SNPC TTTT   C CCTC           C             C      T C    C C/T
rs27556216
MPD | dbSNP | MGI SNP Detail
Chr4:140878174fEpha2 : Coding-Synonymous1SNPA AAAA   G AAAA           A             A      A A    A A/G
rs27556215
MPD | dbSNP | MGI SNP Detail
Chr4:140878207fEpha2 : Coding-Synonymous1SNPC CCCC   T CCCC           C             C      C C    C C/T
rs27556214
MPD | dbSNP | MGI SNP Detail
Chr4:140878225fEpha2 : Coding-Synonymous1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs27556213
MPD | dbSNP | MGI SNP Detail
Chr4:140878285fEpha2 : Coding-Synonymous1SNPG GGGG   A GGGG           G             G      G G    G A/G
rs27556212
MPD | dbSNP | MGI SNP Detail
Chr4:140878297fEpha2 : Coding-Synonymous1SNPG AAAA   G GGAG           G             G      A G    G A/G
rs3725446
MPD | dbSNP | MGI SNP Detail
Chr4:140878341fEpha2 : Intron1SNPC     T                                                 C/T
rs3725448
MPD | dbSNP | MGI SNP Detail
Chr4:140878342fEpha2 : Intron1SNPC     G                                                 C/G
rs3725471
MPD | dbSNP | MGI SNP Detail
Chr4:140878353fEpha2 : Intron1SNPT     C                                                 C/T
rs3725492
MPD | dbSNP | MGI SNP Detail
Chr4:140878364fEpha2 : Intron1SNPA     T                                                 A/T
rs3726075
MPD | dbSNP | MGI SNP Detail
Chr4:140878464fEpha2 : Intron2SNPA CCCCC  C AACA           A             A      C A    A A/C
rs3726135
MPD | dbSNP | MGI SNP Detail
Chr4:140878496fEpha2 : Intron2SNPT CCCCC  T TTCT           T             T      C T    T C/T
rs27556211
MPD | dbSNP | MGI SNP Detail
Chr4:140878563fEpha2 : Coding-Synonymous1SNPA AAAA   G AAAA           A             A      A A    A A/G
rs27556210
MPD | dbSNP | MGI SNP Detail
Chr4:140878743fEpha2 : Intron2SNPGGAAAAA  G GGAG           G             G      A G    G A/G
rs32736988
MPD | dbSNP | MGI SNP Detail
Chr4:140878801fEpha2 : Intron1SNPAAC   C                                                 A/C
rs32816311
MPD | dbSNP | MGI SNP Detail
Chr4:140878830fEpha2 : Intron1SNPAAG   G                                                 A/G
rs32449285
MPD | dbSNP | MGI SNP Detail
Chr4:140878858fEpha2 : Intron1SNPAAG   G                                                 A/G
rs32536296
MPD | dbSNP | MGI SNP Detail
Chr4:140878858fEpha2 : Intron1SNPAAC   C                                                 A/C
rs27556209
MPD | dbSNP | MGI SNP Detail
Chr4:140878983fEpha2 : Intron1SNPG GGGG   A GGGG           G             G      G G    G A/G
rs27556208
MPD | dbSNP | MGI SNP Detail
Chr4:140879139fEpha2 : Intron1SNPC TTTT   C CCTC           C             C      T C    C C/T
rs27556207
MPD | dbSNP | MGI SNP Detail
Chr4:140879366fEpha2 : Coding-Synonymous1SNPG GGGG   G AGGG           G             G      G      G A/G
rs27556206
MPD | dbSNP | MGI SNP Detail
Chr4:140879435fEpha2 : Coding-Synonymous1SNPG AAAA   G GGAG           G             G      A G    G A/G
rs27556205
MPD | dbSNP | MGI SNP Detail
Chr4:140879513fEpha2 : Coding-Synonymous1SNPC TTTT   C CCTC           C             C      T C    C C/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27556204
MPD | dbSNP | MGI SNP Detail
Chr4:140879650fEpha2 : Intron1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs27556203
MPD | dbSNP | MGI SNP Detail
Chr4:140879890fEpha2 : Intron1SNPG GGGG   T GGGG           G             G      G G    G G/T
rs27556202
MPD | dbSNP | MGI SNP Detail
Chr4:140880569fEpha2 : Intron1SNPA TTT    A A A            A                    T        A/T
rs27556201
MPD | dbSNP | MGI SNP Detail
Chr4:140880630fEpha2 : Intron1SNPA GGGG   A AAGA           A             A      G A    A A/G
rs27556200
MPD | dbSNP | MGI SNP Detail
Chr4:140880654fEpha2 : Intron1SNPT TTTT   C TTTT           T             T      T T    T C/T
rs27556199
MPD | dbSNP | MGI SNP Detail
Chr4:140880740fEpha2 : Intron1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs27556198
MPD | dbSNP | MGI SNP Detail
Chr4:140880915fEpha2 : Intron1SNPC TTTT     CC C           C             C      T C    C C/T
rs27556197
MPD | dbSNP | MGI SNP Detail
Chr4:140880997fEpha2 : Intron1SNPA GGGG   G A GA           A             A      G A    A A/G
rs27556196
MPD | dbSNP | MGI SNP Detail
Chr4:140881084fEpha2 : Intron1SNPT CCCC   C TTCT           T             T      C T    T C/T
rs32473237
MPD | dbSNP | MGI SNP Detail
Chr4:140881248fEpha2 : Intron1SNP TC   C                                                 C/T
rs32385287
MPD | dbSNP | MGI SNP Detail
Chr4:140881250fEpha2 : Intron1SNP GA   A                                                 A/G
rs27556195
MPD | dbSNP | MGI SNP Detail
Chr4:140881311fEpha2 : Intron1SNPA AAAA   C AAAA           A             A      A A    A A/C
rs27556194
MPD | dbSNP | MGI SNP Detail
Chr4:140881343fEpha2 : Intron2SNPAAGGGGG  G AAGA           A             A      G A    A A/G
rs27556193
MPD | dbSNP | MGI SNP Detail
Chr4:140881365fEpha2 : Intron1SNPC TTTT   T CCTC           C             C      T C    C C/T
rs27556192
MPD | dbSNP | MGI SNP Detail
Chr4:140881739fEpha2 : Intron2SNPGGAAAAA  G GGAG           G             G      A G    G A/G
rs27556191
MPD | dbSNP | MGI SNP Detail
Chr4:140882105fEpha2 : Intron1SNPT CCCC   C CCCC           T             C      C C    C C/T
rs27556190
MPD | dbSNP | MGI SNP Detail
Chr4:140882216fEpha2 : Intron1SNPT AAAA   A TTAT           T             T      A T    T A/T
rs27556189
MPD | dbSNP | MGI SNP Detail
Chr4:140882258fEpha2 : Intron1SNPC TTTT   C CCTC           C             C      T C    C C/T
rs27556188
MPD | dbSNP | MGI SNP Detail
Chr4:140882304fEpha2 : Intron1SNPT CCCC   T TTCT           T             T      C T    T C/T
rs3659625
MPD | dbSNP | MGI SNP Detail
Chr4:140882484fEpha2 : Intron2SNPG AAAAA  G GGAG           G             G      A G    G A/G
rs3660282
MPD | dbSNP | MGI SNP Detail
Chr4:140882587fEpha2 : Intron2SNPG AAAAA  G GGAG           G             G      A G    G A/G
rs3674488
MPD | dbSNP | MGI SNP Detail
Chr4:140882633fEpha2 : Intron2SNPT CCCCC  C TTCT           T             T      C T    T C/T
rs4138547
MPD | dbSNP | MGI SNP Detail
Chr4:140882660fEpha2 : Intron1SNPC     T                                                 C/T
rs27556187
MPD | dbSNP | MGI SNP Detail
Chr4:140882948fEpha2 : Intron1SNPG AAAA   A GGAG           G             G      A      G A/G
rs27556186
MPD | dbSNP | MGI SNP Detail
Chr4:140883134fEpha2 : Intron2SNPTTGGGGG  G TTGT           T             T      G T    T G/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27556185
MPD | dbSNP | MGI SNP Detail
Chr4:140883574fEpha2 : Intron1SNPA GGGG   G AAGA           A             A      G      A A/G
rs27556184
MPD | dbSNP | MGI SNP Detail
Chr4:140884222fEpha2 : Intron1SNPA AAAA   C AAAA           A             A      A A    A A/C
rs27556183
MPD | dbSNP | MGI SNP Detail
Chr4:140884235fEpha2 : Intron1SNPG AAAA   A GGAG           G             G      A G    G A/G
rs13478024
MPD | dbSNP | MGI SNP Detail
Chr4:140884373fEpha2 : Coding-Synonymous3SNPCCTTTTTTTCCCCTCCCCCTCC    CT T CTTCC CCTCTCTCTCTCCCTCCCCC/T
rs27556182
MPD | dbSNP | MGI SNP Detail
Chr4:140884446fEpha2 : mRNA-UTR2SNPTTCCCCC  C TTCT           T             T      C T    T C/T
rs3091136
MPD | dbSNP | MGI SNP Detail
Chr4:140884575fEpha2 : mRNA-UTR2SNPC CCCC   T CCCC       CCCCC C C     C   C      C C    C C/T
rs3091137
MPD | dbSNP | MGI SNP Detail
Chr4:140884641fEpha2 : mRNA-UTR3SNPAAGGGG   G GGGG       AGGGA G G     G   G      G G    G A/G
rs27556181
MPD | dbSNP | MGI SNP Detail
Chr4:140884762fEpha2 : mRNA-UTR1SNPC CCCC   T CCCC           C             C      C C    C C/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/08/2013
MGI 5.13
The Jackson Laboratory