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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Sycp3 synaptonemal complex protein 3 MGI:109542 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs29332605 MPD | dbSNP | MGI SNP Detail | Chr10:87921331 | f | Sycp3 : Locus-Region | 1 | SNP | T | T | T | T | A | A/T | ||||||||||||
| rs29325920 MPD | dbSNP | MGI SNP Detail | Chr10:87921392 | f | Sycp3 : Locus-Region | 1 | SNP | T | T | T | T | C | C/T | ||||||||||||
| rs29340728 MPD | dbSNP | MGI SNP Detail | Chr10:87921418 | f | Sycp3 : Locus-Region | 1 | SNP | T | T | T | T | C | C/T | ||||||||||||
| rs29358530 MPD | dbSNP | MGI SNP Detail | Chr10:87921489 | f | Sycp3 : Locus-Region | 1 | SNP | A | A | A | T | A/T | |||||||||||||
| rs29384320 MPD | dbSNP | MGI SNP Detail | Chr10:87921626 | f | Sycp3 : Locus-Region | 1 | SNP | G | G | G | A | A/G | |||||||||||||
| rs29316311 MPD | dbSNP | MGI SNP Detail | Chr10:87921997 | f | Sycp3 : Locus-Region | 1 | SNP | T | T | T | A | A/T | |||||||||||||
| rs29354756 MPD | dbSNP | MGI SNP Detail | Chr10:87922218 | f | Sycp3 : Locus-Region | 1 | SNP | G | G | T | G/T | ||||||||||||||
| rs29373577 MPD | dbSNP | MGI SNP Detail | Chr10:87922319 | f | Sycp3 : Locus-Region | 1 | SNP | C | C | T | C/T | ||||||||||||||
| rs29378426 MPD | dbSNP | MGI SNP Detail | Chr10:87922373 | f | Sycp3 : mRNA-UTR | 1 | SNP | A | A | G | A/G | ||||||||||||||
| rs29382404 MPD | dbSNP | MGI SNP Detail | Chr10:87922425 | f | Sycp3 : Coding-Synonymous | 1 | SNP | T | T | T | C | C/T | |||||||||||||
| rs29310857 MPD | dbSNP | MGI SNP Detail | Chr10:87923309 | f | Sycp3 : Intron | 1 | SNP | C | C | C | G | C/G | |||||||||||||
| rs29350029 MPD | dbSNP | MGI SNP Detail | Chr10:87923993 | f | Sycp3 : Intron | 1 | SNP | T | T | C | C/T | ||||||||||||||
| rs29379845 MPD | dbSNP | MGI SNP Detail | Chr10:87924082 | f | Sycp3 : Intron | 1 | SNP | G | G | A | A/G | ||||||||||||||
| rs29327931 MPD | dbSNP | MGI SNP Detail | Chr10:87924361 | f | Sycp3 : Intron | 1 | SNP | A | A | G | A/G | ||||||||||||||
| rs29342894 MPD | dbSNP | MGI SNP Detail | Chr10:87924514 | f | Sycp3 : Intron | 2 | SNP | T | T | T | T | T | T | T | G | T | T | T | G | T | T | G | T | G/T | |
| rs47981217 MPD | dbSNP | MGI SNP Detail | Chr10:87924523 | f | Sycp3 : Intron | 1 | SNP | T | T | G | T | G | T | T | T | G/T | |||||||||
| rs29316215 MPD | dbSNP | MGI SNP Detail | Chr10:87924532 | f | Sycp3 : Intron | 1 | SNP | C | C | T | C/T | ||||||||||||||
| rs29330449 MPD | dbSNP | MGI SNP Detail | Chr10:87924957 | f | Sycp3 : Intron | 2 | SNP | G | G | G | G | G | G | G | G | C | G | G | G | C | G | G | C | G | C/G |
| rs29349230 MPD | dbSNP | MGI SNP Detail | Chr10:87925044 | f | Sycp3 : Intron | 1 | SNP | A | A | A | G | A/G | |||||||||||||
| rs29357207 MPD | dbSNP | MGI SNP Detail | Chr10:87925172 | f | Sycp3 : Intron | 2 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | G | G | A | A/G | ||
| rs29346320 MPD | dbSNP | MGI SNP Detail | Chr10:87925435 | f | Sycp3 : Intron | 1 | SNP | G | G | G | A | A/G | |||||||||||||
| rs29318381 MPD | dbSNP | MGI SNP Detail | Chr10:87925446 | f | Sycp3 : Intron | 1 | SNP | T | T | T | C | C/T | |||||||||||||
| rs29341383 MPD | dbSNP | MGI SNP Detail | Chr10:87925526 | f | Sycp3 : Intron | 1 | SNP | C | C | C | T | C/T | |||||||||||||
| rs29381479 MPD | dbSNP | MGI SNP Detail | Chr10:87925866 | f | Sycp3 : Intron | 2 | SNP | G | G | G | G | G | G | G | G | C | G | G | G | C | C | G | C/G | ||
| rs29321469 MPD | dbSNP | MGI SNP Detail | Chr10:87926206 | f | Sycp3 : Intron | 1 | SNP | A | A | G | A/G | ||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs47722312 MPD | dbSNP | MGI SNP Detail | Chr10:87926350 | f | Sycp3 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | C | A/C | |||
| rs29334044 MPD | dbSNP | MGI SNP Detail | Chr10:87926397 | f | Sycp3 : Intron | 1 | SNP | T | T | A | A/T | ||||||||||||||
| rs29359433 MPD | dbSNP | MGI SNP Detail | Chr10:87926416 | f | Sycp3 : Intron | 1 | SNP | A | A | G | A/G | ||||||||||||||
| rs47291741 MPD | dbSNP | MGI SNP Detail | Chr10:87926725 | f | Sycp3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | A/G | |||
| rs29381900 MPD | dbSNP | MGI SNP Detail | Chr10:87927077 | f | Sycp3 : Intron | 2 | SNP | G | G | G | G | G | G | T | G | T | G | T | G | T | G | G/T | |||
| rs29334452 MPD | dbSNP | MGI SNP Detail | Chr10:87927105 | f | Sycp3 : Intron | 1 | SNP | G | G | A | A/G | ||||||||||||||
| rs29362656 MPD | dbSNP | MGI SNP Detail | Chr10:87927286 | f | Sycp3 : Intron | 1 | SNP | A | A | G | A/G | ||||||||||||||
| rs46264905 MPD | dbSNP | MGI SNP Detail | Chr10:87927313 | f | Sycp3 : Intron | 1 | SNP | T | T | T | T | T | T | A | T | T | T | A | A | A | T | A/T | |||
| rs51425269 MPD | dbSNP | MGI SNP Detail | Chr10:87927338 | f | Sycp3 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | C | C | A/C | ||
| rs29317070 MPD | dbSNP | MGI SNP Detail | Chr10:87927346 | f | Sycp3 : Intron | 2 | SNP | A | A | A | A | A | A | A | G | A | A | G | G | A | G | A | A/G | ||
| rs45972773 MPD | dbSNP | MGI SNP Detail | Chr10:87927477 | f | Sycp3 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | G | G | T | G/T | |||||
| rs29328344 MPD | dbSNP | MGI SNP Detail | Chr10:87928498 | f | Sycp3 : Intron | 1 | SNP | T | T | A | A/T | ||||||||||||||
| rs48465228 MPD | dbSNP | MGI SNP Detail | Chr10:87928566 | f | Sycp3 : Intron | 1 | SNP | G | G | G | G | A | G | G | A | G | G | G | G | G | A/G | ||||
| rs48079334 MPD | dbSNP | MGI SNP Detail | Chr10:87928597 | f | Sycp3 : Intron | 1 | SNP | A | A | C | A | C | C | A | A/C | ||||||||||
| rs29324043 MPD | dbSNP | MGI SNP Detail | Chr10:87929043 | f | Sycp3 : Intron | 2 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | C | T | T | C | T | C/T |
| rs29378931 MPD | dbSNP | MGI SNP Detail | Chr10:87929172 | f | Sycp3 : Intron | 2 | SNP | T | T | T | T | T | T | T | C | T | T | T | C | T | C | T | C/T | ||
| rs29339575 MPD | dbSNP | MGI SNP Detail | Chr10:87929387 | f | Sycp3 : Intron | 2 | SNP | T | T | T | T | T | T | T | C | T | T | T | C | T | T | T | C/T | ||
| rs48735136 MPD | dbSNP | MGI SNP Detail | Chr10:87929437 | f | Sycp3 : Intron | 1 | SNP | T | T | T | C | T | T | C | T | T | T | T | C/T | ||||||
| rs46705900 MPD | dbSNP | MGI SNP Detail | Chr10:87929611 | f | Sycp3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | G | G | A | A/G | |||||
| rs29346498 MPD | dbSNP | MGI SNP Detail | Chr10:87929739 | f | Sycp3 : Intron | 2 | SNP | C | C | C | C | C | C | C | T | T | C | T | C | T | C | C | T | C | C/T |
| rs29328240 MPD | dbSNP | MGI SNP Detail | Chr10:87929754 | f | Sycp3 : Intron | 1 | SNP | A | A | A | G | A/G | |||||||||||||
| rs29381717 MPD | dbSNP | MGI SNP Detail | Chr10:87929875 | f | Sycp3 : Intron | 1 | SNP | C | C | C | A | A/C | |||||||||||||
| rs50358145 MPD | dbSNP | MGI SNP Detail | Chr10:87929971 | f | Sycp3 : Intron | 1 | SNP | T | T | T | C | T | C | T | C | T | C/T | ||||||||
| rs29364899 MPD | dbSNP | MGI SNP Detail | Chr10:87930188 | f | Sycp3 : Intron | 1 | SNP | A | A | C | A/C | ||||||||||||||
| rs29330193 MPD | dbSNP | MGI SNP Detail | Chr10:87930524 | f | Sycp3 : Intron | 1 | SNP | G | G | G | T | G/T | |||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs29331268 MPD | dbSNP | MGI SNP Detail | Chr10:87930557 | f | Sycp3 : Intron | 1 | SNP | C | C | C | T | C/T | |||||||||||||
| rs48561801 MPD | dbSNP | MGI SNP Detail | Chr10:87930883 | f | Sycp3 : Intron | 1 | SNP | A | A | A | A | T | A | A | T | A | A | A | A | A | A/T | ||||
| rs29342906 MPD | dbSNP | MGI SNP Detail | Chr10:87931203 | f | Sycp3 : Intron | 1 | SNP | A | A | A | G | A/G | |||||||||||||
| rs50616059 MPD | dbSNP | MGI SNP Detail | Chr10:87931386 | f | Sycp3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | G | A | A | G | A | A/G | |||
| rs45879880 MPD | dbSNP | MGI SNP Detail | Chr10:87931727 | f | Sycp3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C/T | |||
| rs48013694 MPD | dbSNP | MGI SNP Detail | Chr10:87931745 | f | Sycp3 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | A | C | A | C | C | A | A/C | |||
| rs50441000 MPD | dbSNP | MGI SNP Detail | Chr10:87931776 | f | Sycp3 : Intron | 1 | SNP | T | T | G | T | T | G | T | T | T | G | G | T | G/T | |||||
| rs29316686 MPD | dbSNP | MGI SNP Detail | Chr10:87932755 | f | Sycp3 : Intron | 1 | SNP | C | C | C | A | A/C | |||||||||||||
| rs51441754 MPD | dbSNP | MGI SNP Detail | Chr10:87932993 | f | Sycp3 : Intron | 1 | SNP | T | T | T | C | T | T | C | T | T | T | T | T | C/T | |||||
| rs49561028 MPD | dbSNP | MGI SNP Detail | Chr10:87933104 | f | Sycp3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | G | A/G | ||
| rs46689253 MPD | dbSNP | MGI SNP Detail | Chr10:87933295 | f | Sycp3 : Intron | 1 | SNP | A | A | A | A | T | A | A | T | A | A | A | A | A | A/T | ||||
| rs50649917 MPD | dbSNP | MGI SNP Detail | Chr10:87933936 | f | Sycp3 : Intron | 1 | SNP | T | T | T | T | T | A | T | T | A | T | T | T | T | T | T | A/T | ||
| rs46826271 MPD | dbSNP | MGI SNP Detail | Chr10:87934017 | f | Sycp3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | A/G | |||
| rs29349409 MPD | dbSNP | MGI SNP Detail | Chr10:87934262 | f | Sycp3 : Intron | 1 | SNP | T | T | C | C/T | ||||||||||||||
| rs29317643 MPD | dbSNP | MGI SNP Detail | Chr10:87934378 | f | Chpt1 : Locus-Region Sycp3 : Intron | 1 | SNP | C | C | C | T | C/T | |||||||||||||
| rs33857617 MPD | dbSNP | MGI SNP Detail | Chr10:87934487 | f | Chpt1 : Locus-Region Sycp3 : Intron | 2 | SNP | T | T | T | T | T | T | T | C | C | T | C | T | C | T | C | T | C/T | |
| rs29324036 MPD | dbSNP | MGI SNP Detail | Chr10:87934539 | f | Chpt1 : Locus-Region Sycp3 : Intron | 2 | SNP | A | A | A | A | A | T | A | T | T | A | A/T | |||||||
| rs51369711 MPD | dbSNP | MGI SNP Detail | Chr10:87934639 | f | Chpt1 : Locus-Region Sycp3 : Intron | 1 | SNP | T | T | T | T | C | T | C | T | T | T | T | C/T | ||||||
| rs33849304 MPD | dbSNP | MGI SNP Detail | Chr10:87934640 | f | Chpt1 : Locus-Region Sycp3 : Intron | 2 | SNP | A | A | A | A | A | A | A | G | A | A | A | G | A | A | A/G | |||
| rs48404192 MPD | dbSNP | MGI SNP Detail | Chr10:87934778 | f | Chpt1 : Locus-Region Sycp3 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | C | A | A | A | A | A | A/C | |||
| rs49841626 MPD | dbSNP | MGI SNP Detail | Chr10:87934959 | f | Chpt1 : Locus-Region Sycp3 : Intron | 1 | SNP | C | C | G | C | C | G | C | G | G | C/G | ||||||||
| rs29363313 MPD | dbSNP | MGI SNP Detail | Chr10:87935851 | f | Chpt1 : Locus-Region Sycp3 : mRNA-UTR | 2 | SNP | C | C | C | C | C | C | T | T | C | T | C | T | C | C | T | C | C/T | |
| rs29327657 MPD | dbSNP | MGI SNP Detail | Chr10:87935874 | f | Chpt1 : Locus-Region Sycp3 : mRNA-UTR | 2 | SNP | A | A | A | A | A | A | G | G | A | G | A | G | G | A | A/G | |||
| rs51763015 MPD | dbSNP | MGI SNP Detail | Chr10:87935951 | f | Chpt1 : Locus-Region Sycp3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||
| rs29318095 MPD | dbSNP | MGI SNP Detail | Chr10:87936177 | f | Chpt1 : Locus-Region Sycp3 : Locus-Region | 1 | SNP | G | G | G | T | G/T | |||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs29362782 MPD | dbSNP | MGI SNP Detail | Chr10:87936394 | f | Chpt1 : mRNA-UTR Sycp3 : Locus-Region | 1 | SNP | G | G | G | A | A/G | |||||||||||||
| rs29382185 MPD | dbSNP | MGI SNP Detail | Chr10:87936415 | f | Chpt1 : mRNA-UTR Sycp3 : Locus-Region | 2 | SNP | T | T | T | T | T | T | T | C | C | T | C | T | T | C | C | T | C/T | |
| rs29336283 MPD | dbSNP | MGI SNP Detail | Chr10:87936448 | f | Chpt1 : mRNA-UTR Sycp3 : Locus-Region | 2 | SNP | G | G | G | G | G | G | G | G | C | G | G | C | G | G | C | G | C/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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