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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) MGI:107537 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs30630717 MPD | dbSNP | MGI SNP Detail | Chr7:133713490 | r | Cln3 : Locus-Region | 1 | SNP | T | G | G | G/T | ||||||||||||||||||||||
| rs31012809 MPD | dbSNP | MGI SNP Detail | Chr7:133713632 | r | Cln3 : Locus-Region | 1 | SNP | T | G | G | G/T | ||||||||||||||||||||||
| rs30979145 MPD | dbSNP | MGI SNP Detail | Chr7:133713708 | r | Cln3 : Locus-Region | 1 | SNP | C | T | T | C/T | ||||||||||||||||||||||
| rs30779595 MPD | dbSNP | MGI SNP Detail | Chr7:133714487 | r | Cln3 : Locus-Region | 1 | SNP | G | A | A/G | |||||||||||||||||||||||
| rs30611432 MPD | dbSNP | MGI SNP Detail | Chr7:133714509 | r | Cln3 : Locus-Region | 1 | SNP | A | T | A/T | |||||||||||||||||||||||
| rs6337342 MPD | dbSNP | MGI SNP Detail | Chr7:133714912 | f | Cln3 : Locus-Region | 1 | SNP | G | T | G/T | |||||||||||||||||||||||
| rs6337360 MPD | dbSNP | MGI SNP Detail | Chr7:133714913 | f | Cln3 : Locus-Region | 1 | SNP | T | C | C/T | |||||||||||||||||||||||
| rs6339092 MPD | dbSNP | MGI SNP Detail | Chr7:133715243 | f | Cln3 : mRNA-UTR | 1 | SNP | C | T | C/T | |||||||||||||||||||||||
| rs30959042 MPD | dbSNP | MGI SNP Detail | Chr7:133715335 | r | Cln3 : mRNA-UTR | 1 | SNP | C | T | C | C | C/T | |||||||||||||||||||||
| rs33088888 MPD | dbSNP | MGI SNP Detail | Chr7:133715628 | f | Cln3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs3091031 MPD | dbSNP | MGI SNP Detail | Chr7:133715708 | r | Cln3 : mRNA-UTR | 2 | SNP | T | C | T | T | T | C | T | T | T | T | T | C/T | ||||||||||||||
| rs33088891 MPD | dbSNP | MGI SNP Detail | Chr7:133715735 | f | Cln3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs33089274 MPD | dbSNP | MGI SNP Detail | Chr7:133715767 | f | Cln3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | C/T | |||||||||||
| rs30920817 MPD | dbSNP | MGI SNP Detail | Chr7:133715778 | r | Cln3 : mRNA-UTR | 2 | SNP | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A/G | |||||||||
| rs33864411 MPD | dbSNP | MGI SNP Detail | Chr7:133715834 | r | Cln3 : Coding-Synonymous | 1 | SNP | T | C | C | C/T | ||||||||||||||||||||||
| rs33089278 MPD | dbSNP | MGI SNP Detail | Chr7:133716085 | f | Cln3 : Coding-NonSynonymous | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | T | C/T | ||||||||||
| rs33089281 MPD | dbSNP | MGI SNP Detail | Chr7:133716322 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | G | G | C/G | ||||||||||
| rs33090174 MPD | dbSNP | MGI SNP Detail | Chr7:133716485 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C/T | ||||||||||
| rs33090177 MPD | dbSNP | MGI SNP Detail | Chr7:133716590 | f | Cln3 : Intron | 1 | SNP | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C/T | ||||||||||
| rs33090179 MPD | dbSNP | MGI SNP Detail | Chr7:133716625 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G/T | ||||||||||
| rs33090182 MPD | dbSNP | MGI SNP Detail | Chr7:133716727 | f | Cln3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | C/T | |||||||||||
| rs33091035 MPD | dbSNP | MGI SNP Detail | Chr7:133716732 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | ||||||||||
| rs33091038 MPD | dbSNP | MGI SNP Detail | Chr7:133716763 | f | Cln3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | T | C/T | ||||||||||
| rs31300735 MPD | dbSNP | MGI SNP Detail | Chr7:133716858 | f | Cln3 : Intron | 1 | SNP | G | A | G | A/G | ||||||||||||||||||||||
| rs33091041 MPD | dbSNP | MGI SNP Detail | Chr7:133717087 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs33091754 MPD | dbSNP | MGI SNP Detail | Chr7:133717852 | f | Cln3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | C/T | |||||||||||
| rs32314550 MPD | dbSNP | MGI SNP Detail | Chr7:133717985 | f | Cln3 : Intron | 1 | SNP | T | C | T | C/T | ||||||||||||||||||||||
| rs31921522 MPD | dbSNP | MGI SNP Detail | Chr7:133718168 | f | Cln3 : Intron | 1 | SNP | T | C | T | T | C/T | |||||||||||||||||||||
| rs32439369 MPD | dbSNP | MGI SNP Detail | Chr7:133718178 | f | Cln3 : Intron | 2 | SNP | A | A | G | A | A | A | A | G | A | A | G | A | A | A | A | A | A | A/G | ||||||||
| rs31769684 MPD | dbSNP | MGI SNP Detail | Chr7:133718295 | f | Cln3 : Intron | 1 | SNP | A | T | A | A | A/T | |||||||||||||||||||||
| rs33091759 MPD | dbSNP | MGI SNP Detail | Chr7:133718408 | f | Cln3 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||||||||
| rs33091762 MPD | dbSNP | MGI SNP Detail | Chr7:133718568 | f | Cln3 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | ||||||||||
| rs31179937 MPD | dbSNP | MGI SNP Detail | Chr7:133718825 | f | Cln3 : Intron | 1 | SNP | C | T | C | C | C/T | |||||||||||||||||||||
| rs31938580 MPD | dbSNP | MGI SNP Detail | Chr7:133718917 | f | Cln3 : Coding-NonSynonymous | 1 | SNP | A | G | A | A | A/G | |||||||||||||||||||||
| rs33092635 MPD | dbSNP | MGI SNP Detail | Chr7:133718978 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs32244832 MPD | dbSNP | MGI SNP Detail | Chr7:133719090 | f | Cln3 : Intron | 1 | SNP | C | T | C | C | C/T | |||||||||||||||||||||
| rs31132389 MPD | dbSNP | MGI SNP Detail | Chr7:133719456 | f | Cln3 : Intron | 1 | SNP | A | A | G | A | A | A/G | ||||||||||||||||||||
| rs31992766 MPD | dbSNP | MGI SNP Detail | Chr7:133720069 | f | Cln3 : Intron | 1 | SNP | C | C | T | C | C | C/T | ||||||||||||||||||||
| rs33088276 MPD | dbSNP | MGI SNP Detail | Chr7:133721205 | f | Cln3 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||||||||
| rs33088279 MPD | dbSNP | MGI SNP Detail | Chr7:133721548 | f | Cln3 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | ||||||||||||
| rs33088282 MPD | dbSNP | MGI SNP Detail | Chr7:133721648 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | A | C | A/C | ||||||||||
| rs33088965 MPD | dbSNP | MGI SNP Detail | Chr7:133721687 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | ||||||||||
| rs33088967 MPD | dbSNP | MGI SNP Detail | Chr7:133722845 | f | Cln3 : Intron | 1 | SNP | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |||||||||||
| rs33088969 MPD | dbSNP | MGI SNP Detail | Chr7:133723141 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C/T | ||||||||||||
| rs33088971 MPD | dbSNP | MGI SNP Detail | Chr7:133723302 | f | Cln3 : Intron | 1 | SNP | A | G | G | G | A | G | G | A | G | G | G | A | G | A/G | ||||||||||||
| rs33088973 MPD | dbSNP | MGI SNP Detail | Chr7:133723630 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | |||||||||||
| rs33089965 MPD | dbSNP | MGI SNP Detail | Chr7:133723639 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | A | C | C | C | C | C | C | A/C | |||||||||||
| rs33089967 MPD | dbSNP | MGI SNP Detail | Chr7:133723863 | f | Cln3 : Coding-NonSynonymous | 1 | SNP | G | G | A | A | G | G | G | G | G | G | G | G | A | G | G | A/G | ||||||||||
| rs33089969 MPD | dbSNP | MGI SNP Detail | Chr7:133724437 | f | Cln3 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||||||||||
| rs32114865 MPD | dbSNP | MGI SNP Detail | Chr7:133724453 | f | Cln3 : Intron | 2 | SNP | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C/T | |||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31771624 MPD | dbSNP | MGI SNP Detail | Chr7:133724602 | f | Cln3 : Intron | 1 | SNP | C | T | C | C | C/T | |||||||||||||||||||||
| rs32210652 MPD | dbSNP | MGI SNP Detail | Chr7:133724648 | f | Cln3 : Intron | 2 | SNP | T | C | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | |||||||||
| rs33090956 MPD | dbSNP | MGI SNP Detail | Chr7:133724882 | f | Cln3 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||||||||
| rs33090958 MPD | dbSNP | MGI SNP Detail | Chr7:133724948 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||
| rs33090961 MPD | dbSNP | MGI SNP Detail | Chr7:133724987 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||||||||||
| rs33091794 MPD | dbSNP | MGI SNP Detail | Chr7:133725294 | f | Cln3 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A/G | |||||||||||
| rs33091797 MPD | dbSNP | MGI SNP Detail | Chr7:133725436 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||
| rs33091800 MPD | dbSNP | MGI SNP Detail | Chr7:133725456 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | T | G | G | G | G | T | G | G/T | ||||||||||
| rs33091802 MPD | dbSNP | MGI SNP Detail | Chr7:133725539 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | |||||||||||
| rs33092615 MPD | dbSNP | MGI SNP Detail | Chr7:133725576 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||
| rs33092618 MPD | dbSNP | MGI SNP Detail | Chr7:133725715 | f | Cln3 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | G | T | T | T | T | T | G/T | |||||||||||
| rs33092621 MPD | dbSNP | MGI SNP Detail | Chr7:133725737 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | |||||||||||
| rs33093314 MPD | dbSNP | MGI SNP Detail | Chr7:133725805 | f | Cln3 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A/G | |||||||||||
| rs33093317 MPD | dbSNP | MGI SNP Detail | Chr7:133725904 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | A | C | C | C | C | A | C | A/C | ||||||||||||
| rs31101004 MPD | dbSNP | MGI SNP Detail | Chr7:133725917 | f | Cln3 : Intron | 1 | SNP | A | A | G | A | A | A/G | ||||||||||||||||||||
| rs33093320 MPD | dbSNP | MGI SNP Detail | Chr7:133726048 | f | Cln3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||
| rs31961492 MPD | dbSNP | MGI SNP Detail | Chr7:133726225 | f | Cln3 : Intron | 1 | SNP | T | T | C | T | C/T | |||||||||||||||||||||
| rs33093322 MPD | dbSNP | MGI SNP Detail | Chr7:133726468 | f | Cln3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs33093323 MPD | dbSNP | MGI SNP Detail | Chr7:133726708 | f | Apobr : Locus-Region Cln3 : mRNA-UTR | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||||||||
| rs32020536 MPD | dbSNP | MGI SNP Detail | Chr7:133726715 | f | Apobr : Locus-Region Cln3 : mRNA-UTR | 1 | SNP | T | A | T | A/T | ||||||||||||||||||||||
| rs31719696 MPD | dbSNP | MGI SNP Detail | Chr7:133726721 | f | Apobr : Locus-Region Cln3 : mRNA-UTR | 1 | SNP | G | A | A/G | |||||||||||||||||||||||
| rs33094575 MPD | dbSNP | MGI SNP Detail | Chr7:133726958 | f | Apobr : Locus-Region Cln3 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||||||||
| rs33094577 MPD | dbSNP | MGI SNP Detail | Chr7:133727215 | f | Apobr : Locus-Region Cln3 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | A | C | C | C | C | A | C | A/C |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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