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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Pde6c
phosphodiesterase 6C, cGMP specific, cone, alpha prime
MGI:105956

134 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs30612795
MPD | dbSNP | MGI SNP Detail
Chr19:38205452fPde6c : Locus-Region1SNPT     G    G                                    G/T
rs31278674
MPD | dbSNP | MGI SNP Detail
Chr19:38205452fPde6c : Locus-Region1SNPT     G    T                                    G/T
rs6286564
MPD | dbSNP | MGI SNP Detail
Chr19:38205453fPde6c : Locus-Region1SNP      G   T                                     G/T
rs6286633
MPD | dbSNP | MGI SNP Detail
Chr19:38205533fPde6c : Locus-Region1SNP      A   T                                     A/T
rs6287649
MPD | dbSNP | MGI SNP Detail
Chr19:38205665fPde6c : Locus-Region1SNP      G   A                                     A/G
rs30853830
MPD | dbSNP | MGI SNP Detail
Chr19:38206379fPde6c : Locus-Region1SNP  T   A    T                                    A/T
rs30357495
MPD | dbSNP | MGI SNP Detail
Chr19:38206511fPde6c : Locus-Region1SNP  C   T    C                                    C/T
rs30608494
MPD | dbSNP | MGI SNP Detail
Chr19:38206518fPde6c : Locus-Region1SNP  G   A    G                                    A/G
rs30423114
MPD | dbSNP | MGI SNP Detail
Chr19:38206672fPde6c : Locus-Region1SNP  C   T    C                                    C/T
rs30349343
MPD | dbSNP | MGI SNP Detail
Chr19:38206734fPde6c : Locus-Region1SNP  A   G    A                                    A/G
rs30358371
MPD | dbSNP | MGI SNP Detail
Chr19:38207434fPde6c : Locus-Region1SNPAGA   G    A                                    A/G
rs30738168
MPD | dbSNP | MGI SNP Detail
Chr19:38207498fPde6c : Coding-Synonymous1SNPGAG   A    G                                    A/G
rs3665244
MPD | dbSNP | MGI SNP Detail
Chr19:38208118fPde6c : Intron1SNP    T C                                         C/T
rs31292698
MPD | dbSNP | MGI SNP Detail
Chr19:38209265fPde6c : Intron1SNP CT   C    T                                    C/T
rs31229653
MPD | dbSNP | MGI SNP Detail
Chr19:38209479fPde6c : Intron1SNPATA   T    A                                    A/T
rs30710797
MPD | dbSNP | MGI SNP Detail
Chr19:38209715fPde6c : Intron1SNPTCT   C    T                                    C/T
rs31105060
MPD | dbSNP | MGI SNP Detail
Chr19:38209795fPde6c : Intron1SNPAGA   G    A                                    A/G
rs30408781
MPD | dbSNP | MGI SNP Detail
Chr19:38210002fPde6c : Intron1SNPGAG   A    G                                    A/G
rs30417642
MPD | dbSNP | MGI SNP Detail
Chr19:38210064fPde6c : Intron1SNP CT   C    T                                    C/T
rs30754514
MPD | dbSNP | MGI SNP Detail
Chr19:38210177fPde6c : Intron1SNP GA   G    A                                    A/G
rs30319978
MPD | dbSNP | MGI SNP Detail
Chr19:38210264fPde6c : Intron1SNP  A   G    A                                    A/G
rs31202691
MPD | dbSNP | MGI SNP Detail
Chr19:38210393fPde6c : Intron1SNP  C   T    C                                    C/T
rs30932471
MPD | dbSNP | MGI SNP Detail
Chr19:38210481fPde6c : Intron1SNP  A   C    A                                    A/C
rs30308404
MPD | dbSNP | MGI SNP Detail
Chr19:38210573fPde6c : Intron1SNP  G   A    G                                    A/G
rs31030916
MPD | dbSNP | MGI SNP Detail
Chr19:38211593fPde6c : Intron1SNP A    A    G                                    A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs30613157
MPD | dbSNP | MGI SNP Detail
Chr19:38211625fPde6c : Intron1SNP G    G    C                                    C/G
rs30348306
MPD | dbSNP | MGI SNP Detail
Chr19:38211935fPde6c : Intron1SNP C    C    T                                    C/T
rs30989216
MPD | dbSNP | MGI SNP Detail
Chr19:38212159fPde6c : Intron1SNPA     G    A                                    A/G
rs30667836
MPD | dbSNP | MGI SNP Detail
Chr19:38212450fPde6c : Intron1SNPC C   T    T                                    C/T
rs30368447
MPD | dbSNP | MGI SNP Detail
Chr19:38212578fPde6c : Intron1SNPA A   G    A                                    A/G
rs31015497
MPD | dbSNP | MGI SNP Detail
Chr19:38214956fPde6c : Intron1SNP TA   T    A                                    A/T
rs30368603
MPD | dbSNP | MGI SNP Detail
Chr19:38215643fPde6c : Intron1SNP TC   T    C                                    C/T
rs30401917
MPD | dbSNP | MGI SNP Detail
Chr19:38215652fPde6c : Intron1SNP TC   T    C                                    C/T
rs30818033
MPD | dbSNP | MGI SNP Detail
Chr19:38215652fPde6c : Intron1SNP TC        T                                    C/T
rs31135417
MPD | dbSNP | MGI SNP Detail
Chr19:38216627fPde6c : Intron1SNP CG   C    G                                    C/G
rs30365662
MPD | dbSNP | MGI SNP Detail
Chr19:38216899fPde6c : Intron1SNP AT   A    T                                    A/T
rs31075375
MPD | dbSNP | MGI SNP Detail
Chr19:38218039fPde6c : Intron1SNPCTC   T    C                                    C/T
rs30326526
MPD | dbSNP | MGI SNP Detail
Chr19:38219924fPde6c : Intron1SNPA     G    A                                    A/G
rs30660581
MPD | dbSNP | MGI SNP Detail
Chr19:38219931fPde6c : Intron1SNPC     A    C                                    A/C
rs30763177
MPD | dbSNP | MGI SNP Detail
Chr19:38220144fPde6c : Intron1SNPCTC   T    C                                    C/T
rs30372119
MPD | dbSNP | MGI SNP Detail
Chr19:38220185fPde6c : Intron1SNPCAC   A    C                                    A/C
rs31049497
MPD | dbSNP | MGI SNP Detail
Chr19:38220226fPde6c : Intron1SNPGTG   T    G                                    G/T
rs30655669
MPD | dbSNP | MGI SNP Detail
Chr19:38220331fPde6c : Intron1SNPG G   A    G                                    A/G
rs30756140
MPD | dbSNP | MGI SNP Detail
Chr19:38220535fPde6c : Intron1SNPCTC   T    C                                    C/T
rs30354580
MPD | dbSNP | MGI SNP Detail
Chr19:38221890fPde6c : Intron1SNP CT   C    T                                    C/T
rs31258925
MPD | dbSNP | MGI SNP Detail
Chr19:38222556fPde6c : Intron1SNP  C        A                                    A/C
rs31196068
MPD | dbSNP | MGI SNP Detail
Chr19:38222904fPde6c : Intron1SNP GA   G    A                                    A/G
rs31087253
MPD | dbSNP | MGI SNP Detail
Chr19:38222932fPde6c : Intron1SNP AG   A    G                                    A/G
rs30419138
MPD | dbSNP | MGI SNP Detail
Chr19:38222959fPde6c : Intron1SNP TC   T    C                                    C/T
rs30513206
MPD | dbSNP | MGI SNP Detail
Chr19:38223363fPde6c : Intron1SNP TC   T    C                                    C/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31256944
MPD | dbSNP | MGI SNP Detail
Chr19:38224395fPde6c : Intron1SNPGAG   A    G                                    A/G
rs30614859
MPD | dbSNP | MGI SNP Detail
Chr19:38224602fPde6c : Intron1SNPTCT   C    T                                    C/T
rs30646649
MPD | dbSNP | MGI SNP Detail
Chr19:38224660fPde6c : Intron1SNPCAC   A    C                                    A/C
rs30806323
MPD | dbSNP | MGI SNP Detail
Chr19:38225038fPde6c : Intron1SNP AG   A    G                                    A/G
rs30322569
MPD | dbSNP | MGI SNP Detail
Chr19:38225206fPde6c : Intron1SNP AG   A    G                                    A/G
rs31241466
MPD | dbSNP | MGI SNP Detail
Chr19:38225659fPde6c : Intron1SNP CT   C    T                                    C/T
rs30850390
MPD | dbSNP | MGI SNP Detail
Chr19:38225979fPde6c : Intron1SNP  T   C    T                                    C/T
rs31288169
MPD | dbSNP | MGI SNP Detail
Chr19:38226436fPde6c : Intron1SNP  A        A                                    A
rs31097191
MPD | dbSNP | MGI SNP Detail
Chr19:38227360fPde6c : Intron1SNP  G   T                                         G/T
rs6356519
MPD | dbSNP | MGI SNP Detail
Chr19:38227551fPde6c : Intron1SNP      C   G                                     C/G
rs6357367
MPD | dbSNP | MGI SNP Detail
Chr19:38227681fPde6c : Intron1SNP      T   A                                     A/T
rs6357368
MPD | dbSNP | MGI SNP Detail
Chr19:38227683fPde6c : Intron1SNP      G   T                                     G/T
rs6370435
MPD | dbSNP | MGI SNP Detail
Chr19:38227774fPde6c : Intron1SNP      G   T                                     G/T
rs6370472
MPD | dbSNP | MGI SNP Detail
Chr19:38227796fPde6c : Intron1SNP      T   C                                     C/T
rs6370544
MPD | dbSNP | MGI SNP Detail
Chr19:38227831fPde6c : Intron1SNP      C   T                                     C/T
rs6370962
MPD | dbSNP | MGI SNP Detail
Chr19:38227867fPde6c : Intron2SNP  T   G   TT                                    G/T
rs6371059
MPD | dbSNP | MGI SNP Detail
Chr19:38227929fPde6c : Intron1SNP      C   T                                     C/T
rs6371060
MPD | dbSNP | MGI SNP Detail
Chr19:38227931fPde6c : Intron1SNP      A   G                                     A/G
rs6371507
MPD | dbSNP | MGI SNP Detail
Chr19:38227986fPde6c : Intron1SNP      A   G                                     A/G
rs6371597
MPD | dbSNP | MGI SNP Detail
Chr19:38228038fPde6c : Intron1SNP      G   A                                     A/G
rs6371979
MPD | dbSNP | MGI SNP Detail
Chr19:38228065fPde6c : Intron1SNP      C   T                                     C/T
rs6372006
MPD | dbSNP | MGI SNP Detail
Chr19:38228082fPde6c : Intron1SNP      T   C                                     C/T
rs6372063
MPD | dbSNP | MGI SNP Detail
Chr19:38228115fPde6c : Intron1SNP      T   C                                     C/T
rs3701178
MPD | dbSNP | MGI SNP Detail
Chr19:38229152fPde6c : Intron1SNP    T C                                         C/T
rs30708669
MPD | dbSNP | MGI SNP Detail
Chr19:38229664fPde6c : Intron1SNP AG   A    G                                    A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs30353674
MPD | dbSNP | MGI SNP Detail
Chr19:38229715fPde6c : Intron1SNP CT   C    T                                    C/T
rs31230779
MPD | dbSNP | MGI SNP Detail
Chr19:38229719fPde6c : Intron1SNP TC   T    C                                    C/T
rs30349935
MPD | dbSNP | MGI SNP Detail
Chr19:38229780fPde6c : Intron1SNP AG   A    G                                    A/G
rs30410578
MPD | dbSNP | MGI SNP Detail
Chr19:38230393fPde6c : Intron1SNP CT        T                                    C/T
rs6165465
MPD | dbSNP | MGI SNP Detail
Chr19:38231211fPde6c : Intron1SNP      C   A                                     A/C
rs6166524
MPD | dbSNP | MGI SNP Detail
Chr19:38231385fPde6c : Intron1SNP      A   G                                     A/G
rs6166569
MPD | dbSNP | MGI SNP Detail
Chr19:38231408fPde6c : Intron1SNP      A   G                                     A/G
rs6166637
MPD | dbSNP | MGI SNP Detail
Chr19:38231448fPde6c : Intron1SNP      A   G                                     A/G
rs30450403
MPD | dbSNP | MGI SNP Detail
Chr19:38232491fPde6c : Intron1SNP AG   A                                         A/G
rs31275296
MPD | dbSNP | MGI SNP Detail
Chr19:38232778fPde6c : Intron1SNP AT   A                                         A/T
rs31215076
MPD | dbSNP | MGI SNP Detail
Chr19:38233217fPde6c : Intron1SNP TC   T    C                                    C/T
rs31123613
MPD | dbSNP | MGI SNP Detail
Chr19:38233237fPde6c : Intron1SNP AC   A    C                                    A/C
rs30609161
MPD | dbSNP | MGI SNP Detail
Chr19:38234097fPde6c : Intron1SNP CT   C                                         C/T
rs31041749
MPD | dbSNP | MGI SNP Detail
Chr19:38234518fPde6c : Intron1SNP GA   G                                         A/G
rs30798312
MPD | dbSNP | MGI SNP Detail
Chr19:38235308fPde6c : Intron1SNP      T    A                                    A/T
rs30957341
MPD | dbSNP | MGI SNP Detail
Chr19:38235441fPde6c : Intron1SNP      A    G                                    A/G
rs30935812
MPD | dbSNP | MGI SNP Detail
Chr19:38236176fPde6c : Intron1SNP AC        C                                    A/C
rs31120251
MPD | dbSNP | MGI SNP Detail
Chr19:38236283fPde6c : Intron1SNP CT                                             C/T
rs30498535
MPD | dbSNP | MGI SNP Detail
Chr19:38236736fPde6c : Intron1SNP  T   G    T                                    G/T
rs30690246
MPD | dbSNP | MGI SNP Detail
Chr19:38237968fPde6c : Intron1SNP  C   G    C                                    C/G
rs30696649
MPD | dbSNP | MGI SNP Detail
Chr19:38238269fPde6c : Intron1SNP  T   C    T                                    C/T
rs31108093
MPD | dbSNP | MGI SNP Detail
Chr19:38238901fPde6c : Intron1SNP T    T    G                                    G/T
rs31100654
MPD | dbSNP | MGI SNP Detail
Chr19:38239669fPde6c : Intron1SNP  T   C    T                                    C/T
rs30662927
MPD | dbSNP | MGI SNP Detail
Chr19:38239801fPde6c : Intron1SNP CT   C    T                                    C/T
rs31277784
MPD | dbSNP | MGI SNP Detail
Chr19:38240543fPde6c : Intron1SNP GA   G    A                                    A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31048024
MPD | dbSNP | MGI SNP Detail
Chr19:38240560fPde6c : Intron1SNP AG   A    G                                    A/G
rs30956478
MPD | dbSNP | MGI SNP Detail
Chr19:38241906fPde6c : Intron1SNP C    C    T                                    C/T
rs3710829
MPD | dbSNP | MGI SNP Detail
Chr19:38242986fPde6c : Intron2SNPTCT T C    T                                    C/T
rs30663250
MPD | dbSNP | MGI SNP Detail
Chr19:38244268fPde6c : Intron1SNP GT   G                                         G/T
rs30556866
MPD | dbSNP | MGI SNP Detail
Chr19:38244936fPde6c : Intron1SNP GA   G                                         A/G
rs31091054
MPD | dbSNP | MGI SNP Detail
Chr19:38245081fPde6c : Intron1SNP GA   G    A                                    A/G
rs30419748
MPD | dbSNP | MGI SNP Detail
Chr19:38246532fPde6c : Intron1SNPGA    A    G                                    A/G
rs30623478
MPD | dbSNP | MGI SNP Detail
Chr19:38246541fPde6c : Intron1SNPAG    G    A                                    A/G
rs6325922
MPD | dbSNP | MGI SNP Detail
Chr19:38246631fPde6c : Intron1SNP      A   G                                     A/G
rs6325936
MPD | dbSNP | MGI SNP Detail
Chr19:38246637fPde6c : Intron1SNP      T   A                                     A/T
rs6228455
MPD | dbSNP | MGI SNP Detail
Chr19:38246708fPde6c : Intron1SNP      G   A                                     A/G
rs33859479
MPD | dbSNP | MGI SNP Detail
Chr19:38246749fPde6c : Intron1SNPCAC   A    C                                    A/C
rs30325325
MPD | dbSNP | MGI SNP Detail
Chr19:38246923fPde6c : Intron1SNPTCT   C    T                                    C/T
rs30965352
MPD | dbSNP | MGI SNP Detail
Chr19:38247886fPde6c : Intron1SNPGCG   C    G                                    C/G
rs31235471
MPD | dbSNP | MGI SNP Detail
Chr19:38247937fPde6c : Intron1SNPTGT   G    T                                    G/T
rs31244567
MPD | dbSNP | MGI SNP Detail
Chr19:38247988fPde6c : Intron1SNPGAG   A    G                                    A/G
rs30852758
MPD | dbSNP | MGI SNP Detail
Chr19:38248135fPde6c : Intron1SNPAGA        A                                    A/G
rs30547611
MPD | dbSNP | MGI SNP Detail
Chr19:38248503fPde6c : Intron1SNP AG   A    G                                    A/G
rs30520668
MPD | dbSNP | MGI SNP Detail
Chr19:38248533fPde6c : Intron1SNP TA   T    A                                    A/T
rs30328921
MPD | dbSNP | MGI SNP Detail
Chr19:38248692fPde6c : Intron1SNP AT   A    T                                    A/T
rs30611645
MPD | dbSNP | MGI SNP Detail
Chr19:38248695fPde6c : Intron1SNP TG   T    G                                    G/T
rs31004458
MPD | dbSNP | MGI SNP Detail
Chr19:38249023fPde6c : Intron1SNP GT   G    T                                    G/T
rs31279776
MPD | dbSNP | MGI SNP Detail
Chr19:38249752fPde6c : Intron1SNPCAC   A    C                                    A/C
rs31137580
MPD | dbSNP | MGI SNP Detail
Chr19:38249766fPde6c : Intron1SNPGAG   A    G                                    A/G
rs13483616
MPD | dbSNP | MGI SNP Detail
Chr19:38252610fPde6c : Coding-Synonymous2SNPTCTTTTCCCCCTTCTTTTTTCTCTCCCTTTTTCTTTCCCTCCTTCTCTC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs30375073
MPD | dbSNP | MGI SNP Detail
Chr19:38254135fPde6c : Intron1SNPA A   C    A                                    A/C
rs30522585
MPD | dbSNP | MGI SNP Detail
Chr19:38254368fPde6c : Intron1SNPG G   A    G                                    A/G
rs30741120
MPD | dbSNP | MGI SNP Detail
Chr19:38254371fPde6c : Intron1SNPG G   A    G                                    A/G
rs30645214
MPD | dbSNP | MGI SNP Detail
Chr19:38254856fPde6c : Intron1SNPATA   T    A                                    A/T
rs30787025
MPD | dbSNP | MGI SNP Detail
Chr19:38255848fPde6c : Intron1SNPGAG                                             A/G
rs30406955
MPD | dbSNP | MGI SNP Detail
Chr19:38255868fPde6c : Intron1SNPTAT                                             A/T
rs30454912
MPD | dbSNP | MGI SNP Detail
Chr19:38255994fPde6c : Intron1SNP GA   G    A                                    A/G
rs30995187
MPD | dbSNP | MGI SNP Detail
Chr19:38256086fPde6c : Intron1SNPGAG   A    G                                    A/G
rs30688467
MPD | dbSNP | MGI SNP Detail
Chr19:38258424fPde6c : Locus-Region1SNPATA        A                                    A/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/08/2013
MGI 5.13
The Jackson Laboratory