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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Lct
lactase
MGI:104576

125 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs46209394
MPD | dbSNP | MGI SNP Detail
Chr1:130180650fLct : Locus-Region1SNPA AAAA GAAAAAAAAAA/G
rs49802826
MPD | dbSNP | MGI SNP Detail
Chr1:130180667fLct : Locus-Region1SNPT TTTT CTTCTTTTCCC/T
rs51402147
MPD | dbSNP | MGI SNP Detail
Chr1:130180870fLct : Locus-Region1SNPG GGGG GGGTGGGGTGG/T
rs47279466
MPD | dbSNP | MGI SNP Detail
Chr1:130180967fLct : Locus-Region1SNPA AAAA GAAGAAAAGGA/G
rs50578311
MPD | dbSNP | MGI SNP Detail
Chr1:130181166fLct : Locus-Region1SNPC CCCC CCCTCCCCCCC/T
rs51939817
MPD | dbSNP | MGI SNP Detail
Chr1:130181176fLct : Locus-Region1SNPG GGGG GGGGGGGGAGA/G
rs51432657
MPD | dbSNP | MGI SNP Detail
Chr1:130181248fLct : Locus-Region1SNPG GGGG GGGGGGGGAGA/G
rs30554455
MPD | dbSNP | MGI SNP Detail
Chr1:130183030fLct : Intron1SNP TC   C T        C/T
rs32516405
MPD | dbSNP | MGI SNP Detail
Chr1:130183320fLct : Intron1SNP GG   T G        G/T
rs31011138
MPD | dbSNP | MGI SNP Detail
Chr1:130184802fLct : Intron1SNP T    G T        G/T
rs52519081
MPD | dbSNP | MGI SNP Detail
Chr1:130184866fLct : Intron1SNPT GTTG  TT GGTG  G/T
rs30604864
MPD | dbSNP | MGI SNP Detail
Chr1:130189104fLct : Intron1SNP T    C T        C/T
rs32139988
MPD | dbSNP | MGI SNP Detail
Chr1:130191469fLct : Intron1SNP  G     A        A/G
rs31312712
MPD | dbSNP | MGI SNP Detail
Chr1:130192642fLct : Intron1SNPC T              C/T
rs46141957
MPD | dbSNP | MGI SNP Detail
Chr1:130197125fLct : Coding-Synonymous1SNP   AA    AG     GA/G
rs50723357
MPD | dbSNP | MGI SNP Detail
Chr1:130197516fLct : Coding-NonSynonymous1SNP   GG    GG  G GAA/G
rs31323818
MPD | dbSNP | MGI SNP Detail
Chr1:130198088fLct : Intron1SNPTTC   C T        C/T
rs45657238
MPD | dbSNP | MGI SNP Detail
Chr1:130199432fLct : Intron1SNP       T T      CC/T
rs47225754
MPD | dbSNP | MGI SNP Detail
Chr1:130200639fLct : Coding-Synonymous1SNP   TTC   TC    CTC/T
rs47490726
MPD | dbSNP | MGI SNP Detail
Chr1:130200675fLct : Coding-Synonymous1SNP    T           CC/T
rs46733959
MPD | dbSNP | MGI SNP Detail
Chr1:130200813fLct : Coding-Synonymous1SNP   GG   GGA     GA/G
rs32140400
MPD | dbSNP | MGI SNP Detail
Chr1:130202497fLct : Intron1SNP  A   A G        A/G
rs46275754
MPD | dbSNP | MGI SNP Detail
Chr1:130202690fLct : Intron1SNPA AAAA AAATAAAATAA/T
rs49494330
MPD | dbSNP | MGI SNP Detail
Chr1:130202711fLct : Intron1SNPA AAAA AAAGAAAAAAA/G
rs49238362
MPD | dbSNP | MGI SNP Detail
Chr1:130203176fLct : Intron1SNPA AAAA AAAGAAAAAAA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47106391
MPD | dbSNP | MGI SNP Detail
Chr1:130203449fLct : Intron1SNPA AAAA AAATAAAA AA/T
rs49175031
MPD | dbSNP | MGI SNP Detail
Chr1:130203586fLct : Intron1SNPG GGGG GGGTGGGGGGG/T
rs48319255
MPD | dbSNP | MGI SNP Detail
Chr1:130204078fLct : Intron1SNP  G GG GGGA GG GGA/G
rs49759641
MPD | dbSNP | MGI SNP Detail
Chr1:130205232fLct : Intron1SNP       TC   C    C/T
rs49895199
MPD | dbSNP | MGI SNP Detail
Chr1:130205280fLct : Intron1SNPT TTTG T TTTT  TTG/T
rs48840169
MPD | dbSNP | MGI SNP Detail
Chr1:130207084fLct : Intron1SNPG  GG  A GA      A/G
rs32627455
MPD | dbSNP | MGI SNP Detail
Chr1:130207201fLct : Intron1SNPGGA              A/G
rs50652898
MPD | dbSNP | MGI SNP Detail
Chr1:130207248fLct : Intron1SNPC   C  T C      CC/T
rs30695762
MPD | dbSNP | MGI SNP Detail
Chr1:130207581fLct : Intron1SNPCCT   T C        C/T
rs47201560
MPD | dbSNP | MGI SNP Detail
Chr1:130208193fLct : Coding-NonSynonymous1SNPC CCC  T CC      C/T
rs46594051
MPD | dbSNP | MGI SNP Detail
Chr1:130209172fLct : Intron1SNPT TTTT CTTCTTTTCTC/T
rs49201804
MPD | dbSNP | MGI SNP Detail
Chr1:130209197fLct : Intron1SNPG GGGG AGGAGGGGAGA/G
rs51217815
MPD | dbSNP | MGI SNP Detail
Chr1:130209234fLct : Intron1SNPC CCCC CCCTCCCCCCC/T
rs31746786
MPD | dbSNP | MGI SNP Detail
Chr1:130209498fLct : Intron2SNPCCTCCTTCCCTTTCTCTC/T
rs48437092
MPD | dbSNP | MGI SNP Detail
Chr1:130209591fLct : Intron1SNPC CCCC CCCCCCCCTCC/T
rs45834332
MPD | dbSNP | MGI SNP Detail
Chr1:130209613fLct : Intron1SNPG GGGG GGGGGGGGAGA/G
rs47845089
MPD | dbSNP | MGI SNP Detail
Chr1:130209626fLct : Intron1SNPC CCCC CCCTCCCCCCC/T
rs31936581
MPD | dbSNP | MGI SNP Detail
Chr1:130209729fLct : Intron2SNPAAGAAGGAAAGGGAGAGA/G
rs49755204
MPD | dbSNP | MGI SNP Detail
Chr1:130209753fLct : Intron1SNPC CCCC CCCTCCCCCCC/T
rs31695958
MPD | dbSNP | MGI SNP Detail
Chr1:130209795fLct : Intron1SNP GA   A          A/G
rs45645254
MPD | dbSNP | MGI SNP Detail
Chr1:130209833fLct : Intron1SNPA AAAA AAACAAAAAAA/C
rs51813622
MPD | dbSNP | MGI SNP Detail
Chr1:130209868fLct : Intron1SNPG GGGG GGGGGGGGAGA/G
rs30768429
MPD | dbSNP | MGI SNP Detail
Chr1:130209893fLct : Intron2SNPGGAGGAAGGGGAAGAGAA/G
rs31903368
MPD | dbSNP | MGI SNP Detail
Chr1:130209902fLct : Intron1SNP GA   A G        A/G
rs48928484
MPD | dbSNP | MGI SNP Detail
Chr1:130210132fLct : Intron1SNPT TTTT TTTCTTTTCTC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31348524
MPD | dbSNP | MGI SNP Detail
Chr1:130210152fLct : Intron2SNPA TAATTTAAATTATATA/T
rs50639045
MPD | dbSNP | MGI SNP Detail
Chr1:130210461fLct : Intron1SNPG GGGG C G GGGG GC/G
rs30462651
MPD | dbSNP | MGI SNP Detail
Chr1:130211059fLct : Intron2SNPTTCTTCCCTTCCCTCCCC/T
rs47592496
MPD | dbSNP | MGI SNP Detail
Chr1:130211082fLct : Intron1SNPT TTTT TTTTTTTTCTC/T
rs32224155
MPD | dbSNP | MGI SNP Detail
Chr1:130211104fLct : Intron2SNPGGAGGAAAGG AAGA AA/G
rs49114814
MPD | dbSNP | MGI SNP Detail
Chr1:130211151fLct : Intron1SNPC CCCC CCCCCCCCTCC/T
rs47997716
MPD | dbSNP | MGI SNP Detail
Chr1:130211499fLct : Intron1SNPT TTTT TTTCTTTTCTC/T
rs49264474
MPD | dbSNP | MGI SNP Detail
Chr1:130211619fLct : Intron1SNPC CCCC CCCCCCCCACA/C
rs32131737
MPD | dbSNP | MGI SNP Detail
Chr1:130211627fLct : Intron2SNPCCACC AACCA ACAAAA/C
rs51729829
MPD | dbSNP | MGI SNP Detail
Chr1:130212186fLct : Intron1SNPC CCCC CCCTCCCCCCC/T
rs50360570
MPD | dbSNP | MGI SNP Detail
Chr1:130212381fLct : Intron3SNPG GGGG GGGAGGGGAGA/G
rs48123026
MPD | dbSNP | MGI SNP Detail
Chr1:130212432fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
rs51852620
MPD | dbSNP | MGI SNP Detail
Chr1:130212581fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
rs48376185
MPD | dbSNP | MGI SNP Detail
Chr1:130212632fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
rs45679760
MPD | dbSNP | MGI SNP Detail
Chr1:130212682fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
rs50505456
MPD | dbSNP | MGI SNP Detail
Chr1:130212733fLct : Intron3SNPG GGGG GGGAGGGGAGA/G
rs49175489
MPD | dbSNP | MGI SNP Detail
Chr1:130212783fLct : Intron1SNPG GGGG GGG GGGGAGA/G
rs50734813
MPD | dbSNP | MGI SNP Detail
Chr1:130212833fLct : Intron3SNPG GGGG GGGAGGGGAGA/G
rs50183623
MPD | dbSNP | MGI SNP Detail
Chr1:130212884fLct : Intron3SNPG GGGG GGGAGGGGAGA/G
rs49565119
MPD | dbSNP | MGI SNP Detail
Chr1:130212934fLct : Intron2SNPG GGGG GGGAGGGGAGA/G
rs46531136
MPD | dbSNP | MGI SNP Detail
Chr1:130213035fLct : Intron3SNPG GGGG GGGAGGGGAGA/G
rs46284951
MPD | dbSNP | MGI SNP Detail
Chr1:130213085fLct : Intron2SNPG GGGG GGGAGGGGAGA/G
rs50267295
MPD | dbSNP | MGI SNP Detail
Chr1:130213186fLct : Intron3SNPG GGGG GGGAGGGGAGA/G
rs48279662
MPD | dbSNP | MGI SNP Detail
Chr1:130213237fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
rs46360971
MPD | dbSNP | MGI SNP Detail
Chr1:130213389fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47714787
MPD | dbSNP | MGI SNP Detail
Chr1:130213791fLct : Intron1SNPG GGGG GGGAGGGGAGA/G
rs51154859
MPD | dbSNP | MGI SNP Detail
Chr1:130214651fLct : Intron1SNPG TGGT TGGTT GTTTG/T
rs50222157
MPD | dbSNP | MGI SNP Detail
Chr1:130214679fLct : Intron1SNPC CCCC C CCCCCCTCC/T
rs48256958
MPD | dbSNP | MGI SNP Detail
Chr1:130214828fLct : Intron1SNPA GAAG GAAAGGAGAGA/G
rs31158624
MPD | dbSNP | MGI SNP Detail
Chr1:130215018fLct : Intron1SNP  T     C        C/T
rs32422472
MPD | dbSNP | MGI SNP Detail
Chr1:130215266fLct : Intron2SNPC TCCT TCCCTTCTCTC/T
rs31979862
MPD | dbSNP | MGI SNP Detail
Chr1:130215303fLct : Intron2SNPC GCCG GCCCGGCGCGC/G
rs32362252
MPD | dbSNP | MGI SNP Detail
Chr1:130215312fLct : Intron1SNP  A     G        A/G
rs31575004
MPD | dbSNP | MGI SNP Detail
Chr1:130215380fLct : Intron2SNPT ATTA ATTAAATATAA/T
rs50656240
MPD | dbSNP | MGI SNP Detail
Chr1:130215406fLct : Intron1SNPC CCCC CCCTCCCCCCC/T
rs50066671
MPD | dbSNP | MGI SNP Detail
Chr1:130215549fLct : Intron1SNPC GCCG G C GGCGCGC/G
rs48436540
MPD | dbSNP | MGI SNP Detail
Chr1:130215566fLct : Intron1SNPC T  T T CCTT TCTC/T
rs48980747
MPD | dbSNP | MGI SNP Detail
Chr1:130215584fLct : Intron1SNPG A GA A GAA G AAA/G
rs49115937
MPD | dbSNP | MGI SNP Detail
Chr1:130215651fLct : Coding-Synonymous1SNPC TCCT TCCCTTCTCTC/T
rs49775227
MPD | dbSNP | MGI SNP Detail
Chr1:130215726fLct : Intron1SNPG GGGG GGGGGGGGAGA/G
rs47525611
MPD | dbSNP | MGI SNP Detail
Chr1:130215776fLct : Intron1SNPG CGG  CGGCCCGCCCC/G
rs3653895
MPD | dbSNP | MGI SNP Detail
Chr1:130215984fLct : Intron1SNPC     T          C/T
rs3653987
MPD | dbSNP | MGI SNP Detail
Chr1:130216039fLct : Intron1SNPT     C          C/T
rs3654612
MPD | dbSNP | MGI SNP Detail
Chr1:130216117fLct : Intron1SNPT     C          C/T
rs3654638
MPD | dbSNP | MGI SNP Detail
Chr1:130216124fLct : Intron1SNPC     T          C/T
rs4137211
MPD | dbSNP | MGI SNP Detail
Chr1:130216185fLct : Intron1SNPC     T          C/T
rs4137793
MPD | dbSNP | MGI SNP Detail
Chr1:130216246fLct : Intron1SNPA     G          A/G
rs4137839
MPD | dbSNP | MGI SNP Detail
Chr1:130216259fLct : Intron1SNPT     C          C/T
rs4137840
MPD | dbSNP | MGI SNP Detail
Chr1:130216260fLct : Intron1SNPG     A          A/G
rs47494164
MPD | dbSNP | MGI SNP Detail
Chr1:130217549fLct : Intron1SNPA AAAA AAAGAAAAAAA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs49385673
MPD | dbSNP | MGI SNP Detail
Chr1:130217856fLct : Intron1SNPG GGGG GGGAGGGGGGA/G
rs48066235
MPD | dbSNP | MGI SNP Detail
Chr1:130218897fLct : Intron1SNPC CCCC CCCTCCCCTCC/T
rs30603655
MPD | dbSNP | MGI SNP Detail
Chr1:130219551fLct : Intron1SNP CT   T C        C/T
rs32170589
MPD | dbSNP | MGI SNP Detail
Chr1:130219561fLct : Intron1SNP CA   A C        A/C
rs32737353
MPD | dbSNP | MGI SNP Detail
Chr1:130219622fLct : Intron1SNP TC   C T        C/T
rs30663014
MPD | dbSNP | MGI SNP Detail
Chr1:130219838fLct : Intron1SNPGGA     G        A/G
rs3661721
MPD | dbSNP | MGI SNP Detail
Chr1:130220036fLct : Intron2SNPG A   A G        A/G
rs3662394
MPD | dbSNP | MGI SNP Detail
Chr1:130220208fLct : Intron1SNPG     A          A/G
rs4135647
MPD | dbSNP | MGI SNP Detail
Chr1:130220264fLct : Intron1SNPT     A          A/T
rs48356734
MPD | dbSNP | MGI SNP Detail
Chr1:130220287fLct : Intron1SNPG GGGG GGGGGGGGAGA/G
rs51097090
MPD | dbSNP | MGI SNP Detail
Chr1:130220323fLct : Intron1SNPT TTTT TTTGTTTTTTG/T
rs32021903
MPD | dbSNP | MGI SNP Detail
Chr1:130220531fLct : Intron2SNPT CTTCCCTTTCCTCTCC/T
rs32051383
MPD | dbSNP | MGI SNP Detail
Chr1:130220596fLct : Intron2SNPG AGG AAGGGAAGAGAA/G
rs32612998
MPD | dbSNP | MGI SNP Detail
Chr1:130221055fLct : Intron1SNP AC   C          A/C
rs50072783
MPD | dbSNP | MGI SNP Detail
Chr1:130221395fLct : Intron1SNP  TC T T  CTTCTCTC/T
rs49647412
MPD | dbSNP | MGI SNP Detail
Chr1:130223168fLct : Intron1SNP  TCCT T CTTTCTC C/T
rs50135525
MPD | dbSNP | MGI SNP Detail
Chr1:130223454fLct : Intron1SNPC CCCC C CTCCCCCCC/T
rs46362617
MPD | dbSNP | MGI SNP Detail
Chr1:130223604fLct : Intron1SNP  A TA A TAAATAAAA/T
rs32045836
MPD | dbSNP | MGI SNP Detail
Chr1:130223927fLct : Intron1SNPC T   T C        C/T
rs32659495
MPD | dbSNP | MGI SNP Detail
Chr1:130224155fLct : Intron1SNPG T     G        G/T
rs31469127
MPD | dbSNP | MGI SNP Detail
Chr1:130224345fLct : Coding-NonSynonymous1SNPCCT   T C        C/T
rs47691210
MPD | dbSNP | MGI SNP Detail
Chr1:130224463fLct : Coding-NonSynonymous1SNPT TTTT TTTTTTTTA A/T
rs47906361
MPD | dbSNP | MGI SNP Detail
Chr1:130224752fLct : Coding-Synonymous1SNPG GGGG GGGAGGGGA A/G
rs47070879
MPD | dbSNP | MGI SNP Detail
Chr1:130225359fLct : Locus-Region1SNPT TTTT T TGTTTTT G/T
rs49510468
MPD | dbSNP | MGI SNP Detail
Chr1:130225390fLct : Locus-Region1SNPC CCCC CCCGCCCCCCC/G

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/22/2013
MGI 5.13
The Jackson Laboratory