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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Six1
sine oculis-related homeobox 1
MGI:102780

54 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs50306992
MPD | dbSNP | MGI SNP Detail
Chr12:73038081fEccp : within coordinates of
Six1 : 1934 bp downstream of
1SNPT TTTT     TTCT        T          T       C   TC/T
rs50437502
MPD | dbSNP | MGI SNP Detail
Chr12:73038850fEccp : within coordinates of
Six1 : 1165 bp downstream of
1SNPT T T    G TT          T                G G   GG/T
rs50631338
MPD | dbSNP | MGI SNP Detail
Chr12:73038876fEccp : within coordinates of
Six1 : 1139 bp downstream of
1SNPC CCC    G             C          C     G G   GC/G
rs3675661
MPD | dbSNP | MGI SNP Detail
Chr12:73038972fEccp : within coordinates of
Six1 : 1043 bp downstream of
3SNPAA    T                                        A/T
rs49212448
MPD | dbSNP | MGI SNP Detail
Chr12:73039406f5730409N16Rik : within coordinates of
Eccp : within coordinates of
Six1 : 609 bp downstream of
1SNP T                                             T
rs47055887
MPD | dbSNP | MGI SNP Detail
Chr12:73039597f5730409N16Rik : within coordinates of
Eccp : within coordinates of
Six1 : 418 bp downstream of
1SNPG GGGG   A GGGG        G          G     G A   GA/G
rs51993984
MPD | dbSNP | MGI SNP Detail
Chr12:73039793f5730409N16Rik : within coordinates of
Eccp : within coordinates of
Six1 : 222 bp downstream of
1SNPC CCCC     CCTC        C          C     C C   CC/T
rs13466031
MPD | dbSNP | MGI SNP Detail
Chr12:73039928f5730409N16Rik : within coordinates of
Eccp : within coordinates of
Six1 : 87 bp downstream of
3SNP  C   G            C               G           C/G
rs45755010
MPD | dbSNP | MGI SNP Detail
Chr12:73040178f5730409N16Rik : within coordinates of
Eccp : within coordinates of
Six1 : within coordinates of
2SNPGGTTTT     TTGT        G          T       G    G/T
rs47042783
MPD | dbSNP | MGI SNP Detail
Chr12:73040722f5730409N16Rik : within coordinates of
Eccp : within coordinates of
Six1 : within coordinates of
1SNPC CCCC     CCCC        C          C     T C   TC/T
rs29217924
MPD | dbSNP | MGI SNP Detail
Chr12:73042336fEccp : within coordinates of
Six1 : mRNA-UTR
2SNP AT   T    T                                   A/T
rs242030736
MPD | dbSNP | MGI SNP Detail
Chr12:73042396fEccp : within coordinates of
Six1 : mRNA-UTR
1SNP                   A               G           A/G
rs4229419
MPD | dbSNP | MGI SNP Detail
Chr12:73043215rEccp : within coordinates of
Six1 : mRNA-UTR
1SNP  A AAA  A A        C A                        A/C
rs4229418
MPD | dbSNP | MGI SNP Detail
Chr12:73043239rEccp : within coordinates of
Six1 : mRNA-UTR
1SNP  T TTT  T T        C T                        C/T
rs4229417
MPD | dbSNP | MGI SNP Detail
Chr12:73043331rEccp : within coordinates of
Six1 : mRNA-UTR
1SNP  T TTT  A T        T T                        A/T
rs4229416
MPD | dbSNP | MGI SNP Detail
Chr12:73043334rEccp : within coordinates of
Six1 : mRNA-UTR
4SNPCCTTTTTTCTTTTCTTTTTTTTCCTTTTTCTTTTTTCCTTTT CTTTC/T
rs4229415
MPD | dbSNP | MGI SNP Detail
Chr12:73043555rEccp : within coordinates of
Six1 : Coding-Synonymous
3SNPCCT TTT  T T        C C                        C/T
rs29207150
MPD | dbSNP | MGI SNP Detail
Chr12:73043733fEccp : within coordinates of
Six1 : Coding-Synonymous
1SNPTTC   C    C                                   C/T
rs257450470
MPD | dbSNP | MGI SNP Detail
Chr12:73044511fEccp : within coordinates of
Six1 : Intron
1SNP                   A               G           A/G
rs29203543
MPD | dbSNP | MGI SNP Detail
Chr12:73045654fEccp : within coordinates of
Six1 : Intron
1SNP GA   A                                        A/G
rs220186157
MPD | dbSNP | MGI SNP Detail
Chr12:73046310fEccp : within coordinates of
Six1 : Coding-Synonymous
1SNP                   T               G           G/T
rs29215525
MPD | dbSNP | MGI SNP Detail
Chr12:73047944fEccp : within coordinates of
Six1 : Locus-Region
2SNPTTA   A    A                                   A/T
rs29147876
MPD | dbSNP | MGI SNP Detail
Chr12:73048335fEccp : within coordinates of
Six1 : Locus-Region
2SNPGGA                                            A/G
rs29222691
MPD | dbSNP | MGI SNP Detail
Chr12:73048336fEccp : within coordinates of
Six1 : Locus-Region
2SNPTTA                                            A/T
rs29189344
MPD | dbSNP | MGI SNP Detail
Chr12:73048565fEccp : within coordinates of
Six1 : Locus-Region
2SNPT A   A    A                                   A/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs33857938
MPD | dbSNP | MGI SNP Detail
Chr12:73048985fEccp : within coordinates of
Six1 : within coordinates of
2SNPAAC        C                                   A/C
rs29161064
MPD | dbSNP | MGI SNP Detail
Chr12:73049173fEccp : within coordinates of
Six1 : within coordinates of
1SNP TA        A                                   A/T
rs29152354
MPD | dbSNP | MGI SNP Detail
Chr12:73050344fEccp : within coordinates of
Six1 : within coordinates of
2SNPC T   T    T                                   C/T
rs29217477
MPD | dbSNP | MGI SNP Detail
Chr12:73050420fEccp : within coordinates of
Six1 : within coordinates of
2SNPA G   G    G                                   A/G
rs239858604
MPD | dbSNP | MGI SNP Detail
Chr12:73051054fEccp : within coordinates of
Six1 : within coordinates of
1SNP                   A               G           A/G
rs48245370
MPD | dbSNP | MGI SNP Detail
Chr12:73051499fEccp : within coordinates of
Six1 : within coordinates of
1SNP AG        G                                   A/G
rs45636316
MPD | dbSNP | MGI SNP Detail
Chr12:73051790fEccp : within coordinates of
Six1 : within coordinates of
1SNP AT                                            A/T
rs47343685
MPD | dbSNP | MGI SNP Detail
Chr12:73051797fEccp : within coordinates of
Six1 : within coordinates of
1SNP TA                                            A/T
rs51058789
MPD | dbSNP | MGI SNP Detail
Chr12:73052626fEccp : within coordinates of
Six1 : within coordinates of
1SNPG GGGG   G GGAG        G          G     G     GA/G
rs52029896
MPD | dbSNP | MGI SNP Detail
Chr12:73052720fEccp : within coordinates of
Six1 : within coordinates of
1SNPA AAAA   G AAGA        A          A     A     AA/G
rs50432050
MPD | dbSNP | MGI SNP Detail
Chr12:73053124fEccp : within coordinates of
Six1 : within coordinates of
1SNPG GGGG   A GGAG        G          G     G     GA/G
rs47648690
MPD | dbSNP | MGI SNP Detail
Chr12:73053202fEccp : within coordinates of
Six1 : within coordinates of
1SNPT TTTT   G TTGT        T          T     T     TG/T
rs29125065
MPD | dbSNP | MGI SNP Detail
Chr12:73053425fEccp : within coordinates of
Six1 : within coordinates of
2SNPGGAGAAG  G GGGA        G          A     A     AA/G
rs259304635
MPD | dbSNP | MGI SNP Detail
Chr12:73053483fEccp : within coordinates of
Six1 : within coordinates of
1SNP                   A               G           A/G
rs46503628
MPD | dbSNP | MGI SNP Detail
Chr12:73053553fEccp : within coordinates of
Six1 : within coordinates of
1SNPC TTTT   C TT T        C          T     T     TC/T
rs46162923
MPD | dbSNP | MGI SNP Detail
Chr12:73053722fEccp : within coordinates of
Six1 : within coordinates of
2SNPG GAGG   G AG G    G   G          GA    G     GA/G
rs46867538
MPD | dbSNP | MGI SNP Detail
Chr12:73053756fEccp : within coordinates of
Six1 : within coordinates of
1SNPA AAAA   A AAGA        A          A     A     AA/G
rs51573880
MPD | dbSNP | MGI SNP Detail
Chr12:73053883fEccp : within coordinates of
Six1 : within coordinates of
1SNPA AAAA   T AATA        A          A     A     AA/T
rs259305571
MPD | dbSNP | MGI SNP Detail
Chr12:73054237fEccp : within coordinates of
Six1 : 350 bp upstream of
1SNP                   C               T           C/T
rs51304482
MPD | dbSNP | MGI SNP Detail
Chr12:73054420fEccp : within coordinates of
Six1 : 533 bp upstream of
1SNPC CCCC   T CCCC        C          C     C     CC/T
rs29164090
MPD | dbSNP | MGI SNP Detail
Chr12:73054904fEccp : within coordinates of
Six1 : 1017 bp upstream of
3SNPGGAAAA   G AAGA        G          A     A     AA/G
rs51657047
MPD | dbSNP | MGI SNP Detail
Chr12:73054957fEccp : within coordinates of
Six1 : 1070 bp upstream of
3SNPGGGA G   G AGGG    G   G          GA    G     GA/G
rs228777618
MPD | dbSNP | MGI SNP Detail
Chr12:73055062fEccp : within coordinates of
Six1 : 1175 bp upstream of
1SNP                   A               C           A/C
rs50464001
MPD | dbSNP | MGI SNP Detail
Chr12:73055096fEccp : within coordinates of
Six1 : 1209 bp upstream of
3SNPGGGAGG   G AGGG    G   G          GA    G     GA/G
rs48742757
MPD | dbSNP | MGI SNP Detail
Chr12:73055419fEccp : within coordinates of
Six1 : 1532 bp upstream of
1SNPT CCCC   T CCTC        T          C     C     CC/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs48338080
MPD | dbSNP | MGI SNP Detail
Chr12:73055529fEccp : within coordinates of
Six1 : 1642 bp upstream of
1SNPG GGGG   A GGGG        G          G     G     GA/G
rs50587915
MPD | dbSNP | MGI SNP Detail
Chr12:73055577fEccp : within coordinates of
Six1 : 1690 bp upstream of
1SNP AG        G                                   A/G
rs48700105
MPD | dbSNP | MGI SNP Detail
Chr12:73055579fEccp : within coordinates of
Six1 : 1692 bp upstream of
1SNP CT        T                                   C/T
rs29207315
MPD | dbSNP | MGI SNP Detail
Chr12:73055869fEccp : within coordinates of
Six1 : 1982 bp upstream of
1SNP AT   T    T                                   A/T

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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory