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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Six3
sine oculis-related homeobox 3
MGI:102764

91 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs33553462
MPD | dbSNP | MGI SNP Detail
Chr17:85611703fGm27435 : within coordinates of
Six3 : 1905 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
2SNP AA   G G           A/G
rs33105834
MPD | dbSNP | MGI SNP Detail
Chr17:85611712fGm27435 : within coordinates of
Six3 : 1896 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
4SNPCTTTC CCCTCTTCTC CCTC/T
rs33416166
MPD | dbSNP | MGI SNP Detail
Chr17:85611822fSix3 : 1786 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
4SNPAAAAGAGGGAGAAGAG GGAA/G
rs108885169
MPD | dbSNP | MGI SNP Detail
Chr17:85611992fSix3 : 1616 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            T  A    A/T
rs50982241
MPD | dbSNP | MGI SNP Detail
Chr17:85612176fSix3 : 1432 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNPG GGGG AGGGG GG  GGGA/G
rs259476551
MPD | dbSNP | MGI SNP Detail
Chr17:85612306fSix3 : 1302 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            G  A    A/G
rs231772249
MPD | dbSNP | MGI SNP Detail
Chr17:85612614fSix3 : 994 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            G  A    A/G
rs245914943
MPD | dbSNP | MGI SNP Detail
Chr17:85612677fSix3 : 931 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            G  T    G/T
rs107932813
MPD | dbSNP | MGI SNP Detail
Chr17:85612687fSix3 : 921 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            A  G    A/G
rs33450583
MPD | dbSNP | MGI SNP Detail
Chr17:85612801fSix3 : 807 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
4SNPA AAGAGAGAAAAGAA G AA/G
rs242104627
MPD | dbSNP | MGI SNP Detail
Chr17:85612840fSix3 : 768 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            C  T    C/T
rs212806272
MPD | dbSNP | MGI SNP Detail
Chr17:85612846fSix3 : 762 bp upstream of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            G  A    A/G
rs108562722
MPD | dbSNP | MGI SNP Detail
Chr17:85613772fSix3 : within coordinates of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            C  G    C/G
rs244566019
MPD | dbSNP | MGI SNP Detail
Chr17:85613881fSix3 : within coordinates of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            G  T    G/T
rs52031980
MPD | dbSNP | MGI SNP Detail
Chr17:85614217fSix3 : within coordinates of
Six3os1 : Intron
1SNPG GGGG CGGGG GG  GGGC/G
rs108441254
MPD | dbSNP | MGI SNP Detail
Chr17:85614615fSix3 : within coordinates of
Six3os1 : Intron
1SNP            T  A    A/T
rs33394257
MPD | dbSNP | MGI SNP Detail
Chr17:85614938fSix3 : within coordinates of
Six3os1 : Intron
4SNPGGGGAGAGAGGGGA G A GA/G
rs260297471
MPD | dbSNP | MGI SNP Detail
Chr17:85615717fSix3 : within coordinates of
Six3os1 : Noncoding-Transcript-Variant
1SNP            C  G    C/G
rs219304540
MPD | dbSNP | MGI SNP Detail
Chr17:85615822fSix3 : within coordinates of
Six3os1 : Intron
Six3os1 : Noncoding-Transcript-Variant
1SNP            C  T    C/T
rs49916779
MPD | dbSNP | MGI SNP Detail
Chr17:85615862fSix3 : within coordinates of
Six3os1 : Intron
2SNPG GGGG GGGAGGGGA GAGA/G
rs49128928
MPD | dbSNP | MGI SNP Detail
Chr17:85615941fSix3 : within coordinates of
Six3os1 : Intron
2SNPT TTT  CTTCTT TC T TC/T
rs108151404
MPD | dbSNP | MGI SNP Detail
Chr17:85616035fSix3 : within coordinates of
Six3os1 : Intron
1SNP            C  G    C/G
rs108255606
MPD | dbSNP | MGI SNP Detail
Chr17:85616046fSix3 : within coordinates of
Six3os1 : Intron
1SNP            T  G    G/T
rs49650797
MPD | dbSNP | MGI SNP Detail
Chr17:85616575fSix3 : within coordinates of
Six3os1 : Intron
2SNPT TTTT TTTATTTTA TATA/T
rs108722971
MPD | dbSNP | MGI SNP Detail
Chr17:85617117fSix3 : within coordinates of
Six3os1 : Intron
1SNP            G  A    A/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47291022
MPD | dbSNP | MGI SNP Detail
Chr17:85617243fSix3 : within coordinates of
Six3os1 : Intron
2SNPG GGGG GGGAGGGGA GAGA/G
rs107694604
MPD | dbSNP | MGI SNP Detail
Chr17:85617759fSix3 : within coordinates of
Six3os1 : Intron
1SNP            G  C    C/G
rs33635979
MPD | dbSNP | MGI SNP Detail
Chr17:85617766fSix3 : within coordinates of
Six3os1 : Intron
4SNPG GGAG GAG GGAGG A GA/G
rs235722661
MPD | dbSNP | MGI SNP Detail
Chr17:85617987fSix3 : within coordinates of
Six3os1 : Intron
1SNP            C  T    C/T
rs254415359
MPD | dbSNP | MGI SNP Detail
Chr17:85617988fSix3 : within coordinates of
Six3os1 : Intron
1SNP            A  G    A/G
rs33703017
MPD | dbSNP | MGI SNP Detail
Chr17:85618159fGm27502 : within coordinates of
Six3 : within coordinates of
Six3os1 : Noncoding-Transcript-Variant
3SNP CC   G G   C  C    C/G
rs33581155
MPD | dbSNP | MGI SNP Detail
Chr17:85618184fGm27502 : within coordinates of
Six3 : within coordinates of
Six3os1 : Noncoding-Transcript-Variant
3SNP CC   T T   C  T    C/T
rs49014181
MPD | dbSNP | MGI SNP Detail
Chr17:85618306fSix3 : within coordinates of
Six3os1 : Noncoding-Transcript-Variant
2SNPC CCCC GCCGCCCCG CGCC/G
rs232305586
MPD | dbSNP | MGI SNP Detail
Chr17:85618968fSix3 : Locus-Region
Six3os1 : Locus-Region
1SNP            A  C    A/C
rs46711735
MPD | dbSNP | MGI SNP Detail
Chr17:85619086fSix3 : Locus-Region
Six3os1 : Locus-Region
2SNPT TTTT TTTGTTTTG TGTG/T
rs33280723
MPD | dbSNP | MGI SNP Detail
Chr17:85619196fSix3 : Locus-Region
Six3os1 : Locus-Region
3SNP CC   T T   C  CC   C/T
rs229933043
MPD | dbSNP | MGI SNP Detail
Chr17:85619279fGm27427 : within coordinates of
Six3 : Locus-Region
Six3os1 : Locus-Region
1SNP            A  T    A/T
rs108672727
MPD | dbSNP | MGI SNP Detail
Chr17:85619685fGm28528 : within coordinates of
Six3 : Locus-Region
Six3os1 : Locus-Region
1SNP            A  G    A/G
rs213793658
MPD | dbSNP | MGI SNP Detail
Chr17:85619764fGm28528 : within coordinates of
Six3 : Locus-Region
Six3os1 : Locus-Region
1SNP            A  G    A/G
rs233216641
MPD | dbSNP | MGI SNP Detail
Chr17:85620250fGm28528 : within coordinates of
Six3 : Locus-Region
Six3os1 : Locus-Region
1SNP            G  A    A/G
rs258868479
MPD | dbSNP | MGI SNP Detail
Chr17:85620459fGm28528 : within coordinates of
Six3 : Locus-Region
1SNP            T  A    A/T
rs225523296
MPD | dbSNP | MGI SNP Detail
Chr17:85621119fSix3 : mRNA-UTR1SNP            C  T    C/T
rs107763965
MPD | dbSNP | MGI SNP Detail
Chr17:85621740fSix3 : Coding-Synonymous1SNP            G  G    G
rs29520250
MPD | dbSNP | MGI SNP Detail
Chr17:85622100fSix3 : Intron2SNP  G   T T           G/T
rs264419023
MPD | dbSNP | MGI SNP Detail
Chr17:85622774fSix3 : Intron1SNP            A  G    A/G
rs33326533
MPD | dbSNP | MGI SNP Detail
Chr17:85622791fSix3 : Intron3SNPG G   A A   G  G    A/G
rs108486095
MPD | dbSNP | MGI SNP Detail
Chr17:85622815fSix3 : Intron1SNP            C  T    C/T
rs254445164
MPD | dbSNP | MGI SNP Detail
Chr17:85622915fSix3 : Intron1SNP            G  A    A/G
rs107839810
MPD | dbSNP | MGI SNP Detail
Chr17:85623021fSix3 : Intron1SNP            T  A    A/T
rs246730655
MPD | dbSNP | MGI SNP Detail
Chr17:85623042fSix3 : Intron1SNP            A  T    A/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs108446813
MPD | dbSNP | MGI SNP Detail
Chr17:85623214fSix3 : Intron1SNP            T  T    T
rs232919403
MPD | dbSNP | MGI SNP Detail
Chr17:85623395fSix3 : Intron1SNP            T  C    C/T
rs108101166
MPD | dbSNP | MGI SNP Detail
Chr17:85623419fSix3 : Intron1SNP            T  C    C/T
rs107676939
MPD | dbSNP | MGI SNP Detail
Chr17:85625306fSix3 : mRNA-UTR1SNP            A  G    A/G
rs108109329
MPD | dbSNP | MGI SNP Detail
Chr17:85626043fSix3 : mRNA-UTR1SNP  T     G           G/T
rs33887163
MPD | dbSNP | MGI SNP Detail
Chr17:85626886fSix3 : within coordinates of3SNP AA     C   A  A    A/C
rs107739450
MPD | dbSNP | MGI SNP Detail
Chr17:85626909fSix3 : within coordinates of1SNP            A  G    A/G
rs108580883
MPD | dbSNP | MGI SNP Detail
Chr17:85627275fSix3 : within coordinates of1SNP            G  G    G
rs233132493
MPD | dbSNP | MGI SNP Detail
Chr17:85627306fSix3 : within coordinates of1SNP            G  A    A/G
rs257467539
MPD | dbSNP | MGI SNP Detail
Chr17:85627473fSix3 : within coordinates of1SNP            C  T    C/T
rs217158142
MPD | dbSNP | MGI SNP Detail
Chr17:85627529fSix3 : within coordinates of1SNP            C  T    C/T
rs242387240
MPD | dbSNP | MGI SNP Detail
Chr17:85627671fSix3 : within coordinates of1SNP            C  G    C/G
rs108565769
MPD | dbSNP | MGI SNP Detail
Chr17:85627711fSix3 : within coordinates of1SNP            A  G    A/G
rs218258798
MPD | dbSNP | MGI SNP Detail
Chr17:85627727fSix3 : within coordinates of1SNP            C  T    C/T
rs229659123
MPD | dbSNP | MGI SNP Detail
Chr17:85628082fSix3 : within coordinates of1SNP            C  T    C/T
rs33887722
MPD | dbSNP | MGI SNP Detail
Chr17:85628167fSix3 : within coordinates of3SNP AA   G     A  A    A/G
rs219092662
MPD | dbSNP | MGI SNP Detail
Chr17:85628364fSix3 : within coordinates of1SNP            A  G    A/G
rs107696939
MPD | dbSNP | MGI SNP Detail
Chr17:85628384fSix3 : within coordinates of1SNP            A  G    A/G
rs265438901
MPD | dbSNP | MGI SNP Detail
Chr17:85628724fSix3 : within coordinates of1SNP            G  T    G/T
rs108881047
MPD | dbSNP | MGI SNP Detail
Chr17:85628840fSix3 : within coordinates of1SNP            C  C    C
rs249946635
MPD | dbSNP | MGI SNP Detail
Chr17:85629423fSix3 : 121 bp downstream of1SNP            C  G    C/G
rs108182192
MPD | dbSNP | MGI SNP Detail
Chr17:85629537fSix3 : 235 bp downstream of1SNP            T  C    C/T
rs48894463
MPD | dbSNP | MGI SNP Detail
Chr17:85629683fSix3 : 381 bp downstream of2SNP  TTTT TTTCTTT C   TC/T
rs244254612
MPD | dbSNP | MGI SNP Detail
Chr17:85629788fSix3 : 486 bp downstream of1SNP            T  C    C/T
rs257656234
MPD | dbSNP | MGI SNP Detail
Chr17:85629932fSix3 : 630 bp downstream of1SNP            T  A    A/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs107925194
MPD | dbSNP | MGI SNP Detail
Chr17:85629944fSix3 : 642 bp downstream of1SNP            A  C    A/C
rs252481984
MPD | dbSNP | MGI SNP Detail
Chr17:85630037fSix3 : 735 bp downstream of1SNP            G  A    A/G
rs108679270
MPD | dbSNP | MGI SNP Detail
Chr17:85630080fSix3 : 778 bp downstream of1SNP            C  G    C/G
rs239788306
MPD | dbSNP | MGI SNP Detail
Chr17:85630116fSix3 : 814 bp downstream of1SNP            A  C    A/C
rs260428429
MPD | dbSNP | MGI SNP Detail
Chr17:85630311fSix3 : 1009 bp downstream of1SNP            A  T    A/T
rs212461415
MPD | dbSNP | MGI SNP Detail
Chr17:85630322fSix3 : 1020 bp downstream of1SNP            G  A    A/G
rs107871531
MPD | dbSNP | MGI SNP Detail
Chr17:85630418fSix3 : 1116 bp downstream of1SNP            C  T    C/T
rs108101437
MPD | dbSNP | MGI SNP Detail
Chr17:85630466fSix3 : 1164 bp downstream of1SNP CC                 C
rs46994073
MPD | dbSNP | MGI SNP Detail
Chr17:85630494fSix3 : 1192 bp downstream of2SNPT TTTT CTTCTTTTC   TC/T
rs213380518
MPD | dbSNP | MGI SNP Detail
Chr17:85630553fSix3 : 1251 bp downstream of1SNP            C  T    C/T
rs107890232
MPD | dbSNP | MGI SNP Detail
Chr17:85630631fSix3 : 1329 bp downstream of1SNP            C  A    A/C
rs108545327
MPD | dbSNP | MGI SNP Detail
Chr17:85630693fSix3 : 1391 bp downstream of1SNP  A                 A
rs48561079
MPD | dbSNP | MGI SNP Detail
Chr17:85630740fSix3 : 1438 bp downstream of1SNP  TTT   A A  AA     A/T
rs258442939
MPD | dbSNP | MGI SNP Detail
Chr17:85630793fSix3 : 1491 bp downstream of1SNP            C  T    C/T
rs107765155
MPD | dbSNP | MGI SNP Detail
Chr17:85631012fSix3 : 1710 bp downstream of1SNP            C  G    C/G
rs108837677
MPD | dbSNP | MGI SNP Detail
Chr17:85631022fSix3 : 1720 bp downstream of1SNP            T  C    C/T

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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory