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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Cst3
cystatin C
MGI:102519

112 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs225723921
MPD | dbSNP | MGI SNP Detail
Chr2:148869738fCst3 : 1984 bp downstream of1SNP            G   A    A/G
rs28325513
MPD | dbSNP | MGI SNP Detail
Chr2:148869914fCst3 : 1808 bp downstream of2SNP       T TT T   C   CC/T
rs258304092
MPD | dbSNP | MGI SNP Detail
Chr2:148870022fCst3 : 1700 bp downstream of1SNP            C   A    A/C
rs219950399
MPD | dbSNP | MGI SNP Detail
Chr2:148870035fCst3 : 1687 bp downstream of1SNP            G   A    A/G
rs27261942
MPD | dbSNP | MGI SNP Detail
Chr2:148870254fCst3 : 1468 bp downstream of1SNP       C CC         AA/C
rs238544561
MPD | dbSNP | MGI SNP Detail
Chr2:148870274fCst3 : 1448 bp downstream of1SNP            G   C    C/G
rs256521566
MPD | dbSNP | MGI SNP Detail
Chr2:148870276fCst3 : 1446 bp downstream of1SNP            G   C    C/G
rs27261941
MPD | dbSNP | MGI SNP Detail
Chr2:148870454fCst3 : 1268 bp downstream of2SNP       G GG G   A   AA/G
rs29502523
MPD | dbSNP | MGI SNP Detail
Chr2:148870757fCst3 : 965 bp downstream of3SNPTTC   T C   C   C    C/T
rs266225895
MPD | dbSNP | MGI SNP Detail
Chr2:148870764fCst3 : 958 bp downstream of1SNP            C   T    C/T
rs27261940
MPD | dbSNP | MGI SNP Detail
Chr2:148870789fCst3 : 933 bp downstream of2SNP       A AA A   G   GA/G
rs258760016
MPD | dbSNP | MGI SNP Detail
Chr2:148870806fCst3 : 916 bp downstream of1SNP            C   T    C/T
rs263367510
MPD | dbSNP | MGI SNP Detail
Chr2:148870841fCst3 : 881 bp downstream of1SNP            T   C    C/T
rs226119200
MPD | dbSNP | MGI SNP Detail
Chr2:148870874fCst3 : 848 bp downstream of1SNP            A   T    A/T
rs27261939
MPD | dbSNP | MGI SNP Detail
Chr2:148870885fCst3 : 837 bp downstream of2SNP       C CC C   T   TC/T
rs33664750
MPD | dbSNP | MGI SNP Detail
Chr2:148871088fCst3 : 634 bp downstream of3SNP TC   T C   C   C    C/T
rs27261938
MPD | dbSNP | MGI SNP Detail
Chr2:148871262fCst3 : Intron2SNP       A AA A   G   GA/G
rs29817475
MPD | dbSNP | MGI SNP Detail
Chr2:148871352fCst3 : Intron2SNP  G   T     G   G    G/T
rs218000661
MPD | dbSNP | MGI SNP Detail
Chr2:148871379fCst3 : Intron1SNP            C   C    C
rs27261937
MPD | dbSNP | MGI SNP Detail
Chr2:148871428fCst3 : Intron2SNP       A AA A   G   GA/G
rs262869939
MPD | dbSNP | MGI SNP Detail
Chr2:148871513fCst3 : Intron1SNP            G   C    C/G
rs27261936
MPD | dbSNP | MGI SNP Detail
Chr2:148871694fCst3 : Intron1SNP       A AG         AA/G
rs27261935
MPD | dbSNP | MGI SNP Detail
Chr2:148871716fCst3 : Intron1SNP       A AA         GA/G
rs29557246
MPD | dbSNP | MGI SNP Detail
Chr2:148871760fCst3 : mRNA-UTR
Gm19595 : Noncoding-Transcript-Variant
2SNP  A   G     A   G    A/G
rs33128608
MPD | dbSNP | MGI SNP Detail
Chr2:148871761fCst3 : mRNA-UTR
Gm19595 : Noncoding-Transcript-Variant
2SNP  T   C     T   C    C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27261934
MPD | dbSNP | MGI SNP Detail
Chr2:148871847fCst3 : mRNA-UTR
Gm19595 : Noncoding-Transcript-Variant
2SNP       G GG G   A   AA/G
rs27261933
MPD | dbSNP | MGI SNP Detail
Chr2:148871872fCst3 : mRNA-UTR
Gm19595 : Noncoding-Transcript-Variant
2SNP       G GG G   A   AA/G
rs8256617
MPD | dbSNP | MGI SNP Detail
Chr2:148871932fCst3 : mRNA-UTR
Gm19595 : Noncoding-Transcript-Variant
4SNP  AGAAGAAAAAAGGGGGA GA/G
rs8256618
MPD | dbSNP | MGI SNP Detail
Chr2:148871938fCst3 : mRNA-UTR
Gm19595 : Noncoding-Transcript-Variant
2SNP  AAAAA A  AAAAAGGA  A/G
rs8256619
MPD | dbSNP | MGI SNP Detail
Chr2:148871972fCst3 : Coding-Synonymous
Gm19595 : Noncoding-Transcript-Variant
1SNP  GGGGG G  G AGG GG  A/G
rs27261932
MPD | dbSNP | MGI SNP Detail
Chr2:148872051fCst3 : Intron
Gm19595 : Intron
4SNP AC   AA CA C   A   AA/C
rs8256620
MPD | dbSNP | MGI SNP Detail
Chr2:148872167fCst3 : Intron
Gm19595 : Intron
3SNP  AAAAAAAAAAAAAAGGA GA/G
rs8256621
MPD | dbSNP | MGI SNP Detail
Chr2:148872183fCst3 : Intron
Gm19595 : Intron
1SNP  TTTTT T  T CTT TT  C/T
rs8256622
MPD | dbSNP | MGI SNP Detail
Chr2:148872205fCst3 : Intron
Gm19595 : Intron
4SNP TCTCCT C  CCCTTCCC  C/T
rs27261931
MPD | dbSNP | MGI SNP Detail
Chr2:148872231fCst3 : Intron
Gm19595 : Intron
2SNP       A AA A   G   GA/G
rs27261930
MPD | dbSNP | MGI SNP Detail
Chr2:148872264fCst3 : Intron
Gm19595 : Intron
2SNP       G GG G   A   AA/G
rs254720813
MPD | dbSNP | MGI SNP Detail
Chr2:148872341fCst3 : Intron
Gm19595 : Intron
1SNP            C   T    C/T
rs27261929
MPD | dbSNP | MGI SNP Detail
Chr2:148872376fCst3 : Intron
Gm19595 : Intron
2SNP       A CA C   A   AA/C
rs27261928
MPD | dbSNP | MGI SNP Detail
Chr2:148872433fCst3 : Intron
Gm19595 : Intron
1SNP       G AG         AA/G
rs33547649
MPD | dbSNP | MGI SNP Detail
Chr2:148872545fCst3 : Intron
Gm19595 : Intron
3SNPGGA   G A   A   G    A/G
rs27261927
MPD | dbSNP | MGI SNP Detail
Chr2:148872552fCst3 : Intron
Gm19595 : Intron
1SNP       C  C         TC/T
rs27261926
MPD | dbSNP | MGI SNP Detail
Chr2:148872595fCst3 : Intron
Gm19595 : Intron
2SNP       G GG G   A   AA/G
rs27261925
MPD | dbSNP | MGI SNP Detail
Chr2:148872636fCst3 : Intron
Gm19595 : Intron
2SNP       C GC G   C   CC/G
rs252154215
MPD | dbSNP | MGI SNP Detail
Chr2:148872685fCst3 : Intron
Gm19595 : Intron
1SNP            A   T    A/T
rs32957054
MPD | dbSNP | MGI SNP Detail
Chr2:148872707fCst3 : Intron
Gm19595 : Intron
3SNPTTC   T C   C   C    C/T
rs29730428
MPD | dbSNP | MGI SNP Detail
Chr2:148872710fCst3 : Intron
Gm19595 : Intron
3SNPTTC   T C   C   C    C/T
rs250089547
MPD | dbSNP | MGI SNP Detail
Chr2:148872771fCst3 : Intron
Gm19595 : Intron
1SNP            A   T    A/T
rs211767652
MPD | dbSNP | MGI SNP Detail
Chr2:148872773fCst3 : Intron
Gm19595 : Intron
1SNP            C   T    C/T
rs27261924
MPD | dbSNP | MGI SNP Detail
Chr2:148872813fCst3 : Intron
Gm19595 : Noncoding-Transcript-Variant
2SNP       C CC C   A   AA/C
rs27261923
MPD | dbSNP | MGI SNP Detail
Chr2:148872936fCst3 : Intron2SNP       G GG G   A   AA/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27261922
MPD | dbSNP | MGI SNP Detail
Chr2:148873024fCst3 : Intron1SNP       A TA         TA/T
rs224765979
MPD | dbSNP | MGI SNP Detail
Chr2:148873067fCst3 : Intron1SNP            C   T    C/T
rs27261921
MPD | dbSNP | MGI SNP Detail
Chr2:148873219fCst3 : Intron2SNP       A TA T   A   AA/T
rs251518103
MPD | dbSNP | MGI SNP Detail
Chr2:148873248fCst3 : Intron1SNP            G   A    A/G
rs220352301
MPD | dbSNP | MGI SNP Detail
Chr2:148873249fCst3 : Intron1SNP            G   A    A/G
rs27261920
MPD | dbSNP | MGI SNP Detail
Chr2:148873305fCst3 : Intron1SNP       C CG         CC/G
rs27261919
MPD | dbSNP | MGI SNP Detail
Chr2:148873397fCst3 : Intron1SNP       A GA         GA/G
rs27261918
MPD | dbSNP | MGI SNP Detail
Chr2:148873503fCst3 : Intron1SNP       C TC         TC/T
rs29733168
MPD | dbSNP | MGI SNP Detail
Chr2:148873708fCst3 : Intron3SNP TC     C   C   C    C/T
rs27261917
MPD | dbSNP | MGI SNP Detail
Chr2:148873721fCst3 : Intron1SNP       A CA         CA/C
rs33111612
MPD | dbSNP | MGI SNP Detail
Chr2:148873748fCst3 : Intron3SNP TC     C   C   C    C/T
rs49574188
MPD | dbSNP | MGI SNP Detail
Chr2:148873800fCst3 : Intron2SNP  T     T   T   T    T
rs29626381
MPD | dbSNP | MGI SNP Detail
Chr2:148874077fCst3 : Intron3SNPGGC   G     C   G    C/G
rs265959193
MPD | dbSNP | MGI SNP Detail
Chr2:148874123fCst3 : Intron1SNP            C   T    C/T
rs27261916
MPD | dbSNP | MGI SNP Detail
Chr2:148874148fCst3 : Intron4SNPTTC   TC CC C   T   TC/T
rs257085030
MPD | dbSNP | MGI SNP Detail
Chr2:148874456fCst3 : Intron1SNP            T   G    G/T
rs214313888
MPD | dbSNP | MGI SNP Detail
Chr2:148874526fCst3 : Intron1SNP            G   C    C/G
rs27261915
MPD | dbSNP | MGI SNP Detail
Chr2:148874735fCst3 : Intron1SNP       A AA         GA/G
rs27261914
MPD | dbSNP | MGI SNP Detail
Chr2:148874749fCst3 : Intron1SNP       T AT         AA/T
rs27261913
MPD | dbSNP | MGI SNP Detail
Chr2:148874808fCst3 : Intron1SNP  C    C CC         AA/C
rs27261912
MPD | dbSNP | MGI SNP Detail
Chr2:148874908fCst3 : Intron2SNP       G CG C   G   GC/G
rs244225691
MPD | dbSNP | MGI SNP Detail
Chr2:148874947fCst3 : Intron1SNP            C   T    C/T
rs212056689
MPD | dbSNP | MGI SNP Detail
Chr2:148874948fCst3 : Intron1SNP            C   G    C/G
rs242615355
MPD | dbSNP | MGI SNP Detail
Chr2:148874966fCst3 : Intron1SNP            C   G    C/G
rs259944560
MPD | dbSNP | MGI SNP Detail
Chr2:148874986fCst3 : Intron1SNP            C   T    C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs216898777
MPD | dbSNP | MGI SNP Detail
Chr2:148874999fCst3 : Intron1SNP            G   T    G/T
rs237684353
MPD | dbSNP | MGI SNP Detail
Chr2:148875020fCst3 : Intron1SNP            G   A    A/G
rs251462665
MPD | dbSNP | MGI SNP Detail
Chr2:148875030fCst3 : Intron1SNP            A   G    A/G
rs27261911
MPD | dbSNP | MGI SNP Detail
Chr2:148875056fCst3 : Intron2SNP       C CC C   T   TC/T
rs27261910
MPD | dbSNP | MGI SNP Detail
Chr2:148875149fCst3 : Intron1SNP       A GA         GA/G
rs27261909
MPD | dbSNP | MGI SNP Detail
Chr2:148875196fCst3 : Coding-NonSynonymous1SNP       A GG         GA/G
rs13467913
MPD | dbSNP | MGI SNP Detail
Chr2:148875264rCst3 : Coding-Synonymous1SNP            G   C    C/G
rs27261908
MPD | dbSNP | MGI SNP Detail
Chr2:148875297fCst3 : Coding-Synonymous1SNP  C    C CC         TC/T
rs249239589
MPD | dbSNP | MGI SNP Detail
Chr2:148875443fCst3 : mRNA-UTR1SNP            C   A    A/C
rs220922628
MPD | dbSNP | MGI SNP Detail
Chr2:148875472fCst3 : Locus-Region1SNP            A   C    A/C
rs251433896
MPD | dbSNP | MGI SNP Detail
Chr2:148875547fCst3 : Locus-Region1SNP            C   G    C/G
rs264080887
MPD | dbSNP | MGI SNP Detail
Chr2:148875570fCst3 : Locus-Region1SNP            T   G    G/T
rs233294066
MPD | dbSNP | MGI SNP Detail
Chr2:148875691fCst3 : Locus-Region1SNP            T   C    C/T
rs27261907
MPD | dbSNP | MGI SNP Detail
Chr2:148875920fCst3 : Locus-Region2SNP       T GT G   T   GG/T
rs258522309
MPD | dbSNP | MGI SNP Detail
Chr2:148876078fCst3 : Locus-Region1SNP            T   C    C/T
rs27261906
MPD | dbSNP | MGI SNP Detail
Chr2:148876256fCst3 : Locus-Region1SNP       T CC        CCC/T
rs225599389
MPD | dbSNP | MGI SNP Detail
Chr2:148876280fCst3 : Locus-Region1SNP            T   G    G/T
rs244166192
MPD | dbSNP | MGI SNP Detail
Chr2:148876298fCst3 : Locus-Region1SNP            C   T    C/T
rs264632446
MPD | dbSNP | MGI SNP Detail
Chr2:148876349fCst3 : Locus-Region1SNP            T   C    C/T
rs233890197
MPD | dbSNP | MGI SNP Detail
Chr2:148876364fCst3 : Locus-Region1SNP            A   G    A/G
rs258834377
MPD | dbSNP | MGI SNP Detail
Chr2:148876382fCst3 : Locus-Region1SNP            A   G    A/G
rs216330388
MPD | dbSNP | MGI SNP Detail
Chr2:148876406fCst3 : Locus-Region1SNP            G   A    A/G
rs239596306
MPD | dbSNP | MGI SNP Detail
Chr2:148876566fCst3 : Locus-Region1SNP            A   G    A/G
rs244335261
MPD | dbSNP | MGI SNP Detail
Chr2:148876676fCst3 : Locus-Region1SNP            T   C    C/T
rs213455332
MPD | dbSNP | MGI SNP Detail
Chr2:148876692fCst3 : Locus-Region1SNP            G   T    G/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs231622591
MPD | dbSNP | MGI SNP Detail
Chr2:148876823fCst3 : Locus-Region1SNP            T   C    C/T
rs249229218
MPD | dbSNP | MGI SNP Detail
Chr2:148876905fCst3 : Locus-Region1SNP            C   T    C/T
rs220542317
MPD | dbSNP | MGI SNP Detail
Chr2:148876921fCst3 : Locus-Region1SNP            A   G    A/G
rs240738832
MPD | dbSNP | MGI SNP Detail
Chr2:148876940fCst3 : Locus-Region1SNP            G   A    A/G
rs263777023
MPD | dbSNP | MGI SNP Detail
Chr2:148876967fCst3 : Locus-Region1SNP            A   G    A/G
rs225022382
MPD | dbSNP | MGI SNP Detail
Chr2:148877035fCst3 : Locus-Region1SNP            A   G    A/G
rs240608291
MPD | dbSNP | MGI SNP Detail
Chr2:148877061fCst3 : Locus-Region1SNP            C   T    C/T
rs258462646
MPD | dbSNP | MGI SNP Detail
Chr2:148877102fCst3 : Locus-Region1SNP            A   G    A/G
rs219717981
MPD | dbSNP | MGI SNP Detail
Chr2:148877300fCst3 : Locus-Region1SNP            T   G    G/T
rs237937053
MPD | dbSNP | MGI SNP Detail
Chr2:148877301fCst3 : Locus-Region1SNP            G   A    A/G
rs27261905
MPD | dbSNP | MGI SNP Detail
Chr2:148877375fCst3 : Locus-Region1SNP  A    G AG         AA/G
rs27261904
MPD | dbSNP | MGI SNP Detail
Chr2:148877689fCst3 : 1997 bp upstream of1SNP       G TG         TG/T

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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory