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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Rag1
recombination activating gene 1
MGI:97848

106 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs29773608
MPD | dbSNP | MGI SNP Detail
Chr2:101476455fRag1 : Locus-Region1SNP C    C A        A/C
rs27362135
MPD | dbSNP | MGI SNP Detail
Chr2:101476684fRag1 : Locus-Region1SNPA GAAA GAAGAAGAGAA/G
rs27362134
MPD | dbSNP | MGI SNP Detail
Chr2:101477245fRag1 : Locus-Region1SNPG AGGG  GGAGGAGAGA/G
rs27362133
MPD | dbSNP | MGI SNP Detail
Chr2:101477340fRag1 : Locus-Region1SNPG AGGG GGGGGGAGGGA/G
rs27362132
MPD | dbSNP | MGI SNP Detail
Chr2:101477374fRag1 : Locus-Region1SNPT ATTT  TT TTAT TA/T
rs27362131
MPD | dbSNP | MGI SNP Detail
Chr2:101477381fRag1 : Locus-Region1SNPG GGGG CGGCGGGGCGC/G
rs27362130
MPD | dbSNP | MGI SNP Detail
Chr2:101477405fRag1 : Locus-Region1SNPA GAAA AAAAAAGAAAA/G
rs27362129
MPD | dbSNP | MGI SNP Detail
Chr2:101477773fRag1 : Locus-Region1SNPT CTTT CTTCTTCTCTC/T
rs32908324
MPD | dbSNP | MGI SNP Detail
Chr2:101478250fRag1 : Locus-Region1SNP CT   C          C/T
rs27362128
MPD | dbSNP | MGI SNP Detail
Chr2:101478299fRag1 : Locus-Region1SNPA AAAA AAAGAAAAGAA/G
rs27362127
MPD | dbSNP | MGI SNP Detail
Chr2:101478381fRag1 : Locus-Region2SNPGGAGGGGGGGGGGAGGGA/G
rs29539464
MPD | dbSNP | MGI SNP Detail
Chr2:101478415fRag1 : mRNA-UTR1SNP GA   G          A/G
rs27362126
MPD | dbSNP | MGI SNP Detail
Chr2:101478728fRag1 : mRNA-UTR1SNPT ATTT TTTTTT TTTA/T
rs27362125
MPD | dbSNP | MGI SNP Detail
Chr2:101479211fRag1 : mRNA-UTR1SNPG GGGG GGGCGGGGCGC/G
rs27362124
MPD | dbSNP | MGI SNP Detail
Chr2:101479611fRag1 : mRNA-UTR1SNPC CCCC  CCACCCCACA/C
rs27362123
MPD | dbSNP | MGI SNP Detail
Chr2:101479646fRag1 : mRNA-UTR1SNPC TCCC TCCTCCTCTCC/T
rs27362122
MPD | dbSNP | MGI SNP Detail
Chr2:101479769fRag1 : mRNA-UTR1SNPC TCCC  CCCCCTC CC/T
rs27362121
MPD | dbSNP | MGI SNP Detail
Chr2:101479770fRag1 : mRNA-UTR1SNPG GGGG AGGAGG GAGA/G
rs27362120
MPD | dbSNP | MGI SNP Detail
Chr2:101480020fRag1 : mRNA-UTR2SNPGGAGGG GGGGGGAGGGA/G
rs27362119
MPD | dbSNP | MGI SNP Detail
Chr2:101480059fRag1 : mRNA-UTR2SNPTTCTTT CTTCTTCTCTC/T
rs27362118
MPD | dbSNP | MGI SNP Detail
Chr2:101480133fRag1 : mRNA-UTR2SNPGGAGGGGGGGGGGAGGGA/G
rs27362117
MPD | dbSNP | MGI SNP Detail
Chr2:101480347fRag1 : mRNA-UTR1SNPT ATTT TTTTTTATTTA/T
rs27362116
MPD | dbSNP | MGI SNP Detail
Chr2:101480390fRag1 : mRNA-UTR1SNPA GAAA GAAGAAGAGAA/G
rs27362115
MPD | dbSNP | MGI SNP Detail
Chr2:101480483fRag1 : mRNA-UTR1SNP  ATTT ATTATTATATA/T
rs27362114
MPD | dbSNP | MGI SNP Detail
Chr2:101480556fRag1 : mRNA-UTR1SNPA GAAA GAGGAAGGGAA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27362113
MPD | dbSNP | MGI SNP Detail
Chr2:101480780fRag1 : mRNA-UTR1SNP  GTTT   TTTTGTTTG/T
rs27362112
MPD | dbSNP | MGI SNP Detail
Chr2:101480819fRag1 : mRNA-UTR1SNPA GAAA GAAGAAGAGAA/G
rs27362111
MPD | dbSNP | MGI SNP Detail
Chr2:101480870fRag1 : mRNA-UTR1SNPG AGGG AGGAGGAGAGA/G
rs27362110
MPD | dbSNP | MGI SNP Detail
Chr2:101480898fRag1 : mRNA-UTR1SNPT GTTT  TTGTT TGTG/T
rs27362109
MPD | dbSNP | MGI SNP Detail
Chr2:101480919fRag1 : mRNA-UTR1SNPC  CCC  CCTCC CTCC/T
rs27362108
MPD | dbSNP | MGI SNP Detail
Chr2:101481042fRag1 : mRNA-UTR1SNP  C  T CT C    C C/T
rs27362107
MPD | dbSNP | MGI SNP Detail
Chr2:101481112fRag1 : mRNA-UTR1SNPG AGGG AGGAGGAGAGA/G
rs27362106
MPD | dbSNP | MGI SNP Detail
Chr2:101481479fRag1 : mRNA-UTR1SNPC TCCC TCCTCCTCTCC/T
rs27362105
MPD | dbSNP | MGI SNP Detail
Chr2:101481665fRag1 : mRNA-UTR1SNPG GGGG GGGAGGGGAGA/G
rs27362104
MPD | dbSNP | MGI SNP Detail
Chr2:101481708fRag1 : mRNA-UTR1SNPA CAAA CAAAAACAAAA/C
rs27362103
MPD | dbSNP | MGI SNP Detail
Chr2:101481929fRag1 : Coding-Synonymous1SNPC CCCC TCCCCCCCCCC/T
rs27362102
MPD | dbSNP | MGI SNP Detail
Chr2:101481932fRag1 : Coding-Synonymous1SNPG GGGG  GGGGGGGAGA/G
rs27362101
MPD | dbSNP | MGI SNP Detail
Chr2:101482088fRag1 : Coding-Synonymous2SNPGGTGGGGTGGGGGTGGGG/T
rs27362100
MPD | dbSNP | MGI SNP Detail
Chr2:101482247fRag1 : Coding-Synonymous2SNPAAGAAAAGAAGAAGAGAA/G
rs27362099
MPD | dbSNP | MGI SNP Detail
Chr2:101482457fRag1 : Coding-Synonymous1SNPC CCCC CCCGCCCCGCC/G
rs27362098
MPD | dbSNP | MGI SNP Detail
Chr2:101482539fRag1 : Coding-NonSynonymous1SNPT TTTT ATTTTTT TTA/T
rs27362097
MPD | dbSNP | MGI SNP Detail
Chr2:101482655fRag1 : Coding-Synonymous2SNPAAGAAAAAAAGAAGAGAA/G
rs27362096
MPD | dbSNP | MGI SNP Detail
Chr2:101482759fRag1 : Coding-NonSynonymous2SNPTTCTTTTCTTCTTCTCTC/T
rs27362095
MPD | dbSNP | MGI SNP Detail
Chr2:101482814fRag1 : Coding-Synonymous2SNPCCTCCCCCCCCCCTCCCC/T
rs33436003
MPD | dbSNP | MGI SNP Detail
Chr2:101483042fRag1 : Coding-Synonymous1SNP GA   G          A/G
rs27362094
MPD | dbSNP | MGI SNP Detail
Chr2:101483048fRag1 : Coding-Synonymous2SNPTTCTTTTCTTCTTCTCTC/T
rs27362093
MPD | dbSNP | MGI SNP Detail
Chr2:101483078fRag1 : Coding-Synonymous1SNPT TTTT CTTCTTTTCTC/T
rs27362092
MPD | dbSNP | MGI SNP Detail
Chr2:101483399fRag1 : Coding-Synonymous2SNPC TCCCCCCCCCCTCCCC/T
rs27362091
MPD | dbSNP | MGI SNP Detail
Chr2:101483581fRag1 : Coding-Synonymous1SNPT GTTT GTTGTT TGTG/T
rs27362090
MPD | dbSNP | MGI SNP Detail
Chr2:101483603fRag1 : Coding-Synonymous1SNPT CTTT CTTCTTCTCTC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27362089
MPD | dbSNP | MGI SNP Detail
Chr2:101483648fRag1 : Coding-Synonymous1SNPA GAAA  AA AAGA AA/G
rs27362088
MPD | dbSNP | MGI SNP Detail
Chr2:101483654fRag1 : Coding-Synonymous1SNPT CTTT CTTCTTCTCTC/T
rs27362087
MPD | dbSNP | MGI SNP Detail
Chr2:101483829fRag1 : Coding-NonSynonymous1SNPC ACCC CCCCCCACCCA/C
rs27362086
MPD | dbSNP | MGI SNP Detail
Chr2:101483916fRag1 : Coding-NonSynonymous1SNPT CTTT CTTCTTCTCTC/T
rs27362085
MPD | dbSNP | MGI SNP Detail
Chr2:101484002fRag1 : Coding-Synonymous1SNPA GAAA GAAGAAGAGAA/G
rs27362084
MPD | dbSNP | MGI SNP Detail
Chr2:101484032fRag1 : Coding-Synonymous1SNPA GAAA GAAGAAGAGAA/G
rs27362083
MPD | dbSNP | MGI SNP Detail
Chr2:101484122fRag1 : Coding-Synonymous1SNPG GGGG GGGAGGGGAGA/G
rs27362082
MPD | dbSNP | MGI SNP Detail
Chr2:101484284fRag1 : Coding-Synonymous1SNPC TCCC CCCTCCTCTCC/T
rs27362081
MPD | dbSNP | MGI SNP Detail
Chr2:101484311fRag1 : Coding-Synonymous1SNPA GAAA GAAGAAGAGAA/G
rs27362080
MPD | dbSNP | MGI SNP Detail
Chr2:101484359fRag1 : Coding-NonSynonymous1SNPT GTTT GTTGTTGTGTG/T
rs27362079
MPD | dbSNP | MGI SNP Detail
Chr2:101484388fRag1 : Coding-NonSynonymous1SNPA CAAA AAACAACACAA/C
rs27362078
MPD | dbSNP | MGI SNP Detail
Chr2:101484440fRag1 : Coding-Synonymous1SNPC TCCC CCCTCCTCTCC/T
rs27362077
MPD | dbSNP | MGI SNP Detail
Chr2:101484488fRag1 : Coding-Synonymous1SNPG AGGG GGGGGGAGGGA/G
rs27362076
MPD | dbSNP | MGI SNP Detail
Chr2:101484539fRag1 : Coding-Synonymous1SNPA GAAA GAAGAAGAGAA/G
rs27362075
MPD | dbSNP | MGI SNP Detail
Chr2:101484725fRag1 : Coding-Synonymous1SNPA GAAA GAAGAAGAGAA/G
rs27362074
MPD | dbSNP | MGI SNP Detail
Chr2:101484896fRag1 : Coding-Synonymous1SNPT CTTT CTTCTTCTCTC/T
rs27362073
MPD | dbSNP | MGI SNP Detail
Chr2:101485060fRag1 : Intron1SNPC CCCC TCCCCCCCCCC/T
rs27362072
MPD | dbSNP | MGI SNP Detail
Chr2:101485184fRag1 : Intron1SNPC TCCC TCCTCCTCTCC/T
rs27362071
MPD | dbSNP | MGI SNP Detail
Chr2:101485273fRag1 : Intron1SNPC CCCC CCCTCCCCTCC/T
rs27362070
MPD | dbSNP | MGI SNP Detail
Chr2:101485418fRag1 : Intron1SNPT C TT C TCTTC C C/T
rs27362069
MPD | dbSNP | MGI SNP Detail
Chr2:101485484fRag1 : Intron1SNPG AGGG GGGAGGAGAGA/G
rs27362068
MPD | dbSNP | MGI SNP Detail
Chr2:101485808fRag1 : Intron1SNPG GGGG GGGAGGGGAGA/G
rs27362067
MPD | dbSNP | MGI SNP Detail
Chr2:101485867fRag1 : Intron1SNPA GAAA GAA AAGA AA/G
rs27362066
MPD | dbSNP | MGI SNP Detail
Chr2:101486565fRag1 : Intron1SNPC CCCC CCCTCCCCTCC/T
rs27362065
MPD | dbSNP | MGI SNP Detail
Chr2:101486608fRag1 : Intron1SNPG GGGG GGGAGGGGAGA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27362064
MPD | dbSNP | MGI SNP Detail
Chr2:101486636fRag1 : Intron1SNPA AAAA GAA AAAA AA/G
rs27362063
MPD | dbSNP | MGI SNP Detail
Chr2:101486666fRag1 : Intron1SNPT TTTT TTTGTTTTGTG/T
rs27362062
MPD | dbSNP | MGI SNP Detail
Chr2:101486988fRag1 : Intron1SNPC CCCC ACCCCCCCCCA/C
rs27362061
MPD | dbSNP | MGI SNP Detail
Chr2:101487015fRag1 : Intron1SNPA AAAA AAATAAAATAA/T
rs27362060
MPD | dbSNP | MGI SNP Detail
Chr2:101487047fRag1 : Intron1SNPG GGGG TGGTGGGGTGG/T
rs27362059
MPD | dbSNP | MGI SNP Detail
Chr2:101487055fRag1 : Intron1SNPC GCCC CCCCCCGCCCC/G
rs27362058
MPD | dbSNP | MGI SNP Detail
Chr2:101487147fRag1 : Intron1SNPA AAAA  AAGAAA GAA/G
rs27362057
MPD | dbSNP | MGI SNP Detail
Chr2:101487203fRag1 : Intron2SNPAAGAAAAAAAAAAGAAAA/G
rs27362056
MPD | dbSNP | MGI SNP Detail
Chr2:101487467fRag1 : Intron1SNPC CCCC CCC CCCCTCC/T
rs27362055
MPD | dbSNP | MGI SNP Detail
Chr2:101487659fRag1 : Intron1SNPG AGGG  GGAGGAGAGA/G
rs27362054
MPD | dbSNP | MGI SNP Detail
Chr2:101488276fRag1 : Intron1SNPG CGGG CGGCGGCGCGC/G
rs27362053
MPD | dbSNP | MGI SNP Detail
Chr2:101488309fRag1 : Intron1SNPG AGGG GGGGGGAGGGA/G
rs27362052
MPD | dbSNP | MGI SNP Detail
Chr2:101488348fRag1 : Intron1SNP  G TT GT T TGGTTG/T
rs27362051
MPD | dbSNP | MGI SNP Detail
Chr2:101488436fRag1 : Intron1SNPA GAAA GAAGAAGAGAA/G
rs27362050
MPD | dbSNP | MGI SNP Detail
Chr2:101488451fRag1 : Intron1SNPA GAAA GAAAAAGAAAA/G
rs27362049
MPD | dbSNP | MGI SNP Detail
Chr2:101488493fRag1 : Intron1SNPG AGGG AGGGGGAGGGA/G
rs27362048
MPD | dbSNP | MGI SNP Detail
Chr2:101488506fRag1 : Intron1SNPA GAAA GAAGAA AGAA/G
rs27362047
MPD | dbSNP | MGI SNP Detail
Chr2:101488562fRag1 : Intron1SNPG  GGG CGGGGG GGGC/G
rs27362046
MPD | dbSNP | MGI SNP Detail
Chr2:101488790fRag1 : Intron1SNPA GAAA GAAAAAGAAAA/G
rs27362045
MPD | dbSNP | MGI SNP Detail
Chr2:101488988fRag1 : Intron1SNPC CCCC TCCCCCCCCCC/T
rs27362044
MPD | dbSNP | MGI SNP Detail
Chr2:101489169fRag1 : Intron1SNPT TTTT CTTCTTTTCTC/T
rs27362043
MPD | dbSNP | MGI SNP Detail
Chr2:101489261fRag1 : Intron1SNPC TCCC TCCTCCTCTCC/T
rs27362042
MPD | dbSNP | MGI SNP Detail
Chr2:101489291fRag1 : Intron1SNPC CCCC CCCTCCCCTCC/T
rs27362041
MPD | dbSNP | MGI SNP Detail
Chr2:101489357fRag1 : Intron1SNPA GAAA GAAAAAGAGAA/G
rs29774548
MPD | dbSNP | MGI SNP Detail
Chr2:101489484fRag1 : Intron1SNPGGA   G          A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27362040
MPD | dbSNP | MGI SNP Detail
Chr2:101489598fRag1 : mRNA-UTR1SNPG GGGG AGGGG G GGA/G
rs27362039
MPD | dbSNP | MGI SNP Detail
Chr2:101489611fRag1 : mRNA-UTR1SNPG GGGG GGGAGGGGGGA/G
rs27362038
MPD | dbSNP | MGI SNP Detail
Chr2:101489628fRag1 : mRNA-UTR1SNPT TTTT CTTTTTTTTTC/T
rs27362037
MPD | dbSNP | MGI SNP Detail
Chr2:101489733fRag1 : Locus-Region1SNPC CCCC TCCCCC CCCC/T
rs27362036
MPD | dbSNP | MGI SNP Detail
Chr2:101489932fRag1 : Locus-Region1SNPG GGGG TGGTGGGGTGG/T
rs27362035
MPD | dbSNP | MGI SNP Detail
Chr2:101490085fRag1 : Locus-Region1SNPT TTTT ATTTTTTTTTA/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/05/2013
MGI 5.13
The Jackson Laboratory